Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003006`

染色体: Chr01 坐标: 49098349-49102127 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003006`
名称	SmilChr01G003006
描述	probable galactinol--sucrose galactosyltransferase 6
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49098349 - 49102127 / `+`

ID 对照

NCBI Gene ID	`LOC130989011`
GeneID	`130989011`
locus_tag	`-`
NCBI Name	`LOC130989011`
原始查询	`SmilChr01G003006`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable galactinol--sucrose galactosyltransferase 6
产物	probable galactinol--sucrose galactosyltransferase 6
Arabidopsis	`AT5G20250` (DIN10) Raffinose synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832147] identity=66.3; qcov=1.03; evalue=0; confidence=high
Rice	`Os06g0172800` - identity=64.5; qcov=0.962; evalue=0; confidence=high
GO	-
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF05691 (Raffinose_syn)
InterPro	-
eggNOG	-
NR	GeneID:130989011

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057768979.1`
2	Cytoplasm	细胞质	0.80000	`XP_057768979.1`
3	Nucleus	细胞核	0.00000	`XP_057768979.1`
4	Chromosome	染色体	0.00000	`XP_057768979.1`
5	Centromere	着丝粒	0.00000	`XP_057768979.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49099155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B29,C6
`Chr1:49099263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr1:49099568`	`A`	`AGG`	2bp_insertion	frameshift_variant	1	C85
`Chr1:49099568`	`A`	`AGG`	2bp_insertion	CDS_variant	1	C85
`Chr1:49099662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:49099674`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:49099821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr1:49100046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B40,B62,B82,D9
`Chr1:49100079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B82
`Chr1:49100237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:49100260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C34,C43
`Chr1:49100371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B26,B62,B98,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768979.1

734 aa

367

734

Raffinose_syn

PF05691 Raffinose_syn 7-718 aa

XP_057768983.1

734 aa

367

734

Raffinose_syn

PF05691 Raffinose_syn 7-718 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768979.1`	Pfam	`PF05691`	Raffinose_syn	Family	7	718	0	1057.8	Raffinose synthase or seed imbibition protein Sip1
`XP_057768983.1`	Pfam	`PF05691`	Raffinose_syn	Family	7	718	0	1057.8	Raffinose synthase or seed imbibition protein Sip1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912996.1
GCGTGGATCTGACGTGGCAAGGCGTTTGACGGTTAGGATATCGAACAAATCGATGCAGAATCCTAATTTCTACCGTTGGATTTAACTCTTCCACCAATCCTAACAAGAAAATCATAACAAAAAGAAGGGGAAAAAGAAAAAAAGAAAAAAAGAAAAGTAGCAGGTGCATTCCACACCAGAACAATCATCATCATCTGCTGCAATGGACATCGGAGCTCACACTCGCTACTATAAATACCCCTCCTTCTCCGCTCTTCTTC...

XM_057913000.1
TAACAAGAAAATCATAACAAAAAGAAGGGGAAAAAGAAAAAAAGAAAAAAAGAAAAGTAGCAGGTGCATTCCACACCAGAACAATCATCATCATCTGCTGCAATGGACATCGGAGCTCACACTCGCTACTATAAATACCCCTCCTTCTCCGCTCTTCTTCTGCATTCCTTCCTCGAGTTTTTCATTTCCTTCATTTTCATTTGCCGTTTCTGTTACTTTGAAGCTATCATCGGAGAGGAGAAGTAATTAAACGATGACGA...

CDS

2 records

下载 CDS FASTA

LOC130989011
ATGACGATCACGCCGGCTGTTCGGATCGCGGAGAGGAAGCTGGTGGTGAAGGAGCGGACGATCCTGAAGGACGTGCCGGAGAATGTGGTGGCGACGTCGAGCGAGGCGGCGGAGGGGGTGTTCCTGGGGGCGGTGTTCGAGGAGGCGAGCAGCCGACACGTGATCTCGCTGGGTACGATCCGCGACGTGCGGTTCCTGGCGTGCTTCCGGTTCAAGCTGTGGTGGATGGCGCAGCGGATGGGCTCGCGCGGGCGCGACAT...

Protein

2 records

下载 Protein FASTA

XP_057768979.1
MTITPAVRIAERKLVVKERTILKDVPENVVATSSEAAEGVFLGAVFEEASSRHVISLGTIRDVRFLACFRFKLWWMAQRMGSRGRDIPLETQFLLVESNDVYTVFLPLIDGPFKACLQGGPADNLDLCIESGDADATASSFTHAVYIGSGTDPFATIHEAINAVKLQLGTFKLRTEKKLPGIVDYFGWCTWDAFYQEVTQEGVEAGLESLKAGGAPPKFVIIDDGWQSTESDQPDKEKEKEKEKERELGAPKLQRLTGIK...

XP_057768983.1
MTITPAVRIAERKLVVKERTILKDVPENVVATSSEAAEGVFLGAVFEEASSRHVISLGTIRDVRFLACFRFKLWWMAQRMGSRGRDIPLETQFLLVESNDVYTVFLPLIDGPFKACLQGGPADNLDLCIESGDADATASSFTHAVYIGSGTDPFATIHEAINAVKLQLGTFKLRTEKKLPGIVDYFGWCTWDAFYQEVTQEGVEAGLESLKAGGAPPKFVIIDDGWQSTESDQPDKEKEKEKEKERELGAPKLQRLTGIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器