Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003007`

染色体: Chr01 坐标: 49112845-49115842 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003007`
名称	SmilChr01G003007
描述	uncharacterized SmilChr01G003007
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49112845 - 49115842 / `+`

ID 对照

NCBI Gene ID	`LOC131009259`
GeneID	`131009259`
locus_tag	`-`
NCBI Name	`LOC131009259`
原始查询	`SmilChr01G003007`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339]; symbol=AT1G48720; hit=AT1G48720; species=arabidopsis; confidence=medium
产物	Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339]; symbol=AT1G48720; hit=AT1G48720; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G48720` (AT1G48720) Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339] identity=66.3; qcov=0.465; evalue=3.75e-42; confidence=medium
Rice	`Os08g0125300` - identity=28.8; qcov=0.965; evalue=8.53e-25; confidence=low
GO	-
KEGG	-
Pfam	PF13961 (DUF4219); PF14223 (Retrotran_gag_2)
InterPro	-
eggNOG	-
NR	GeneID:131009259

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057792526.1`
2	Cytoplasm	细胞质	0.40000	`XP_057792526.1`
3	Cytosol	细胞质基质	0.40000	`XP_057792526.1`
4	Chromosome	染色体	0.00000	`XP_057792526.1`
5	Centromere	着丝粒	0.00000	`XP_057792526.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49113320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B21,B41,C13,C7
`Chr1:49113350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,B66,B70,C2
`Chr1:49113355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,A3,B44,C23,C33
`Chr1:49113365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B37,B66,B70,C2
`Chr1:49113429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,C64
`Chr1:49113438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,B57,C41
`Chr1:49113442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B6,C18,C42,D10
`Chr1:49113456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr1:49113465`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C36
`Chr1:49113465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr1:49113471`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	A9,B55,B98,C58,C72,D8
`Chr1:49113494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B71,B98,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792526.1

198 aa

198

DUF4219

Retrotran_gag_2

PF13961 DUF4219 12-38 aa PF14223 Retrotran_gag_2 24-195 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792526.1`	Pfam	`PF13961`	DUF4219	Domain	12	38	1.6e-10	41.2	Domain of unknown function (DUF4219)
`XP_057792526.1`	Pfam	`PF14223`	Retrotran_gag_2	Domain	24	195	4.4e-33	115.1	gag-polypeptide of LTR copia-type

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936543.1
ATATAAAAATAAACTTGATTTTTTGAGTGAAGATATTTTAAAAGAAAAATATAGAGAATTCTAGAAAAAGTAAGTGAAGATATTTGTATTAGAAATATCTAGAATCAAGATATTTTAAAAGAAAAATATAGAGAATTCTAGAAAAAGTAAGTGAAGATATTTGTATTAGAAATATCTAGAATCAAGATATTTTAAGTAGAAAAATCTAGATAGAAAAAATCAAGAGAATTCTAGAATTCTCACTTGACTACTATATATAT...

CDS

1 records

下载 CDS FASTA

LOC131009259
ATGGCCAACCTACAATCGTTTCAAGTCCCCATGCTCAACAAGAGCAACTTCGACAATTGGAGCATCAAGATGAAGGCGCTATTGGGAGCCCACGACGTTTGGGAGATCGTGGAGAACGGCTACGAGGAGCCGCAGGACGAGGCCGCACTATCCCAACAACAAAAGGATAGATTGCGAGACGCGAGAAAGAGAGACAAGAAGGCTCTCTGTCTCATTTATCAAGCGCTAGGGGACGACGATTTCGAGAAGATCTCGAATGC...

Protein

1 records

下载 Protein FASTA

XP_057792526.1
MANLQSFQVPMLNKSNFDNWSIKMKALLGAHDVWEIVENGYEEPQDEAALSQQQKDRLRDARKRDKKALCLIYQALGDDDFEKISNASTAKEAWEKLQNACKGAEQVKKVRLQTLRGEFESLHMKESESISDYFSRVLAVSNQMKRNGEKLEDVRIMEKILRSLTPRFEHIVITIEETKNLEEMTIDLLLGSLQAYSR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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