当前解析结果
SmilChr01G003023| 统一新 Gene ID | SmilChr01G003023 |
|---|---|
| 名称 | SmilChr01G003023 |
| 描述 | putative chloride channel-like protein CLC-g |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49276093 - 49281214 / - |
| NCBI Gene ID | LOC130989176 |
|---|---|
| GeneID | 130989176 |
| locus_tag | - |
| NCBI Name | LOC130989176 |
| 原始查询 | SmilChr01G003023 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative chloride channel-like protein CLC-g |
| 产物 | putative chloride channel-like protein CLC-g |
| Arabidopsis | AT5G33280 (AT5G33280)Voltage-gated chloride channel family protein [Source:NCBI gene (formerly Entrezgene);Acc:833300] identity=71.4; qcov=0.963; evalue=0; confidence=high |
| Rice | Os08g0300300 (OsCBSCLC6)- identity=64.3; qcov=0.936; evalue=0; confidence=high |
| GO | GO:0005247 (voltage-gated chloride channel activity); GO:0006821 (chloride transport); GO:0009705 (plant-type vacuole membrane); GO:0043231 (intracellular membrane-bounded organelle); GO:0055085 (transmembrane transport) |
| KEGG | smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00571 (CBS); PF00654 (Voltage_CLC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989176 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057769100.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057769106.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057769106.1 |
| 4 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057769106.1 |
| 5 | Vesicle | 囊泡 | 0.20000 | XP_057769106.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49277003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:49277088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C45 |
Chr1:49277094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B90,B92 |
Chr1:49277412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C31,C35 |
Chr1:49277466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,D10 |
Chr1:49277634 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,D10 |
Chr1:49277706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C45 |
Chr1:49277888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr1:49278121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B90,B92 |
Chr1:49278462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:49279763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,D11 |
Chr1:49280144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B123,B83,C59,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769100.1PF00654
Voltage_CLC 138-553 aa
PF00571
CBS 701-749 aa
XP_057769106.1PF00654
Voltage_CLC 136-551 aa
PF00571
CBS 699-747 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769100.1 |
Pfam | PF00654 |
Voltage_CLC | Family | 138 | 553 | 4.1e-79 | 267.0 | Voltage gated chloride channel |
XP_057769100.1 |
Pfam | PF00571 |
CBS | Domain | 701 | 749 | 1.2e-06 | 29.4 | CBS domain |
XP_057769106.1 |
Pfam | PF00654 |
Voltage_CLC | Family | 136 | 551 | 5e-79 | 266.7 | Voltage gated chloride channel |
XP_057769106.1 |
Pfam | PF00571 |
CBS | Domain | 699 | 747 | 1.2e-06 | 29.4 | CBS domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。