Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003024`

染色体: Chr01 坐标: 49291554-49296913 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003024`
名称	SmilChr01G003024
描述	bifunctional purple acid phosphatase 26-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49291554 - 49296913 / `-`

ID 对照

NCBI Gene ID	`LOC130989197`
GeneID	`130989197`
locus_tag	`-`
NCBI Name	`LOC130989197`
原始查询	`SmilChr01G003024`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional purple acid phosphatase 26-like
产物	bifunctional purple acid phosphatase 26-like
Arabidopsis	`AT5G34850` (PAP26) purple acid phosphatase 26 [Source:NCBI gene (formerly Entrezgene);Acc:833406] identity=75.2; qcov=0.971; evalue=0; confidence=high
Rice	`Os06g0643900` (OsPAP26) - identity=74.4; qcov=0.925; evalue=0; confidence=high
GO	GO:0003993 (acid phosphatase activity); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00149 (Metallophos); PF14008 (Metallophos_C); PF16656 (Pur_ac_phosph_N)
InterPro	-
eggNOG	-
NR	GeneID:130989197

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057769127.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057769127.1`
3	Nucleus	细胞核	0.00000	`XP_057769127.1`
4	Chromosome	染色体	0.00000	`XP_057769127.1`
5	Centromere	着丝粒	0.00000	`XP_057769127.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49292230`	`A`	`ATG`	2bp_insertion	frameshift_variant	11	B136,B138,B31,B58,B6,B73,C19,C49,C51,C80,C9
`Chr1:49292270`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C23
`Chr1:49292270`	`TG`	`T`	1bp_deletion	CDS_variant	1	C23
`Chr1:49292476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B62,D9
`Chr1:49292496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,C60
`Chr1:49292866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:49293022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr1:49294412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr1:49294984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:49295434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:49295948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769127.1

482 aa

241

482

Pur_ac_phosph_N

Metallophos

Metallophos_C

PF16656 Pur_ac_phosph_N 58-149 aa PF00149 Metallophos 160-357 aa PF14008 Metallophos_C 383-441 aa

XP_057769136.1

482 aa

241

482

Pur_ac_phosph_N

Metallophos

Metallophos_C

PF16656 Pur_ac_phosph_N 58-149 aa PF00149 Metallophos 160-357 aa PF14008 Metallophos_C 383-441 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769127.1`	Pfam	`PF16656`	Pur_ac_phosph_N	Domain	58	149	4.2e-24	85.7	Purple acid Phosphatase, N-terminal domain
`XP_057769127.1`	Pfam	`PF00149`	Metallophos	Domain	160	357	3.8e-24	86.9	Calcineurin-like phosphoesterase
`XP_057769127.1`	Pfam	`PF14008`	Metallophos_C	Domain	383	441	1.6e-20	74.2	Iron/zinc purple acid phosphatase-like protein C
`XP_057769136.1`	Pfam	`PF16656`	Pur_ac_phosph_N	Domain	58	149	4.2e-24	85.7	Purple acid Phosphatase, N-terminal domain
`XP_057769136.1`	Pfam	`PF00149`	Metallophos	Domain	160	357	3.8e-24	86.9	Calcineurin-like phosphoesterase
`XP_057769136.1`	Pfam	`PF14008`	Metallophos_C	Domain	383	441	1.6e-20	74.2	Iron/zinc purple acid phosphatase-like protein C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913153.1
GTGAAAATAAATAAAACCCCACGTACAGACTTAAATATTATAGAAATATCAAATTTTTGGTCAAACGATAAAAGGTTAATGTCTATTTAAGGCTAGAGGTCTTCAGTTCGATTCTTTTATGCGCAACCTTTAAATCACCAAACTGAGATCGGAGTCAGCCAATCAGTGTGTGAATTGTGATAACTGATAACCTGCGCCTCCCTTTCACAACAATCGCCTAACATGCGCCATGCCTTAAAATATTTATTTAAATATCCATT...

XM_057913144.1
TAAAGTCGTTGAATAAATTTCGCCTGTTGATTCAAAGACCAAAGTAGTGAGACTAGCTTTCGCTTCCAATTTCGGGTGCATGTAAGTTCTGCTCAAACACTTCTACCGTATCATAGCTACACTATCCGTATACTGATGCAGGATCGCCCTATTTTTACTTAAACTGCACCGATGATTGTTGCTTCTGGATTACATCATGAACAATGGAAGGGGCTGACATGCTGTTTAAACTACTGCTTTTGTCACTTGTTCTGTTGAGC...

CDS

2 records

下载 CDS FASTA

LOC130989197
ATGGAAGGGGCTGACATGCTGTTTAAACTACTGCTTTTGTCACTTGTTCTGTTGAGCTGCACAAGCCATGGAAATGCTGGCGTGACTAGTACCTTTGTTCGTACTGAGTGGCCGTCAGTTGATATTCCTCTGGAAAATGAAGTTTTTGCTGTGCCTAAAGGTTATAATGCACCACAGCAAGTGCATATCACACAGGGTGACTATGACGGGAAGGCTGTGATCGTTTCATGGGTTACAATTGATGAACCTGGATCCAACAA...

Protein

2 records

下载 Protein FASTA

XP_057769127.1
MEGADMLFKLLLLSLVLLSCTSHGNAGVTSTFVRTEWPSVDIPLENEVFAVPKGYNAPQQVHITQGDYDGKAVIVSWVTIDEPGSNKVRYGLSEGKLDLTAEGTVHNYTFYNYKSGYIHQCLIEGLQYDTKYYYELGDGDSSRRFWFRTPLSIDPDAPQKFGIIGDLGQTYNSLSTLEHCKQTGAETILFVGDLSYADRYQYHDVGVRWDSWGRFVERSTAYQPWIWSAGNHEIEYFPYMGEVIPFRNFLQRYPTPYLAS...

XP_057769136.1
MEGADMLFKLLLLSLVLLSCTSHGNAGVTSTFVRTEWPSVDIPLENEVFAVPKGYNAPQQVHITQGDYDGKAVIVSWVTIDEPGSNKVRYGLSEGKLDLTAEGTVHNYTFYNYKSGYIHQCLIEGLQYDTKYYYELGDGDSSRRFWFRTPLSIDPDAPQKFGIIGDLGQTYNSLSTLEHCKQTGAETILFVGDLSYADRYQYHDVGVRWDSWGRFVERSTAYQPWIWSAGNHEIEYFPYMGEVIPFRNFLQRYPTPYLAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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