当前解析结果
SmilChr01G003026| 统一新 Gene ID | SmilChr01G003026 |
|---|---|
| 名称 | SmilChr01G003026 |
| 描述 | monogalactosyldiacylglycerol synthase 2, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49310146 - 49313466 / - |
| NCBI Gene ID | LOC130989229 |
|---|---|
| GeneID | 130989229 |
| locus_tag | - |
| NCBI Name | LOC130989229 |
| 原始查询 | SmilChr01G003026 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | monogalactosyldiacylglycerol synthase 2, chloroplastic-like |
| 产物 | monogalactosyldiacylglycerol synthase 2%2C chloroplastic-like |
| Arabidopsis | AT5G20410 (MGD2)monogalactosyldiacylglycerol synthase 2 [Source:NCBI gene (formerly Entrezgene);Acc:832163] identity=80.5; qcov=0.912; evalue=0; confidence=high |
| Rice | Os02g0802700 (OsMGD)- identity=77.4; qcov=0.875; evalue=0; confidence=high |
| GO | GO:0009247 (glycolipid biosynthetic process); GO:0016758 (hexosyltransferase activity) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04101 (Glyco_tran_28_C); PF06925 (MGDG_synth) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989229 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.40000 | XP_057769167.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057769167.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057769167.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057769167.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057769167.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49310473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr1:49310612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B32 |
Chr1:49310667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:49310671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr1:49310860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:49310875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr1:49311272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,C35 |
Chr1:49311285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B62,C78,D9 |
Chr1:49311508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr1:49311537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B14,B57,C5 |
Chr1:49311565 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C31 |
Chr1:49311565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769167.1PF06925
MGDG_synth 69-237 aa
PF04101
Glyco_tran_28_C 264-394 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769167.1 |
Pfam | PF06925 |
MGDG_synth | Family | 69 | 237 | 1e-61 | 208.6 | Monogalactosyldiacylglycerol (MGDG) synthase |
XP_057769167.1 |
Pfam | PF04101 |
Glyco_tran_28_C | Domain | 264 | 394 | 1.7e-10 | 41.9 | Glycosyltransferase family 28 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。