当前解析结果
SmilChr01G003028| 统一新 Gene ID | SmilChr01G003028 |
|---|---|
| 名称 | SmilChr01G003028 |
| 描述 | pyrophosphate-energized vacuolar membrane proton pump-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49334868 - 49341238 / + |
| NCBI Gene ID | LOC130989239 |
|---|---|
| GeneID | 130989239 |
| locus_tag | - |
| NCBI Name | LOC130989239 |
| 原始查询 | SmilChr01G003028 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pyrophosphate-energized vacuolar membrane proton pump-like |
| 产物 | pyrophosphate-energized vacuolar membrane proton pump-like |
| Arabidopsis | AT1G15690 (AVP1)Inorganic H pyrophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838138] identity=86.8; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0644200 (OVP1)- identity=85.5; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004427 (inorganic diphosphate phosphatase activity); GO:0009678 (diphosphate hydrolysis-driven proton transmembrane transporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF03030 (H_PPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989239 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057769177.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057769177.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057769177.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057769177.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057769177.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49337623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:49337644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,C35 |
Chr1:49337743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:49338112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B85,C83 |
Chr1:49338339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,A9,B16,C15,C25 |
Chr1:49338354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,C28 |
Chr1:49338371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,C31,C35 |
Chr1:49338430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B49,B78,C39,D7 |
Chr1:49339159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr1:49339265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:49339911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,D11 |
Chr1:49339920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769177.1PF03030
H_PPase 20-747 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769177.1 |
Pfam | PF03030 |
H_PPase | Family | 20 | 747 | 3.5e-257 | 856.0 | Inorganic H+ pyrophosphatase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。