当前解析结果
SmilChr01G003037| 统一新 Gene ID | SmilChr01G003037 |
|---|---|
| 名称 | SmilChr01G003037 |
| 描述 | uncharacterized SmilChr01G003037 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49375882 - 49376301 / - |
| NCBI Gene ID | LOC131009309 |
|---|---|
| GeneID | 131009309 |
| locus_tag | - |
| NCBI Name | LOC131009309 |
| 原始查询 | SmilChr01G003037 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ribosomal protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838250]; symbol=AT1G16790; hit=AT1G16790; species=arabidopsis; confidence=low |
| 产物 | ribosomal protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838250]; symbol=AT1G16790; hit=AT1G16790; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G16790 (AT1G16790)ribosomal protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838250] identity=37.8; qcov=0.799; evalue=1.12e-20; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009309 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057792593.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057792593.1 |
| 3 | Mitochondrion outer membrane | 线粒体外膜 | 0.20000 | XP_057792593.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057792593.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057792593.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49375953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr1:49375957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B113,B23,C53 |
Chr1:49375965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:49375975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:49376056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B3,B67,C41 |
Chr1:49376069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B17,B3,B67,C41 |
Chr1:49376126 |
A |
AG |
1bp_insertion | frameshift_variant | 6 | A5,B108,B138,B55,C29,D4 |
Chr1:49376158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B137,B24,C35 |
Chr1:49376169 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A5,B108,B138,B15,B22,B25,B32,B35,B43,B47,B53,B54,B55,B56,B74,C10,C19,C29,C47,C49,C6,C72,C9,D1,D9 |
Chr1:49376175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B16,B44,B87 |
Chr1:49376185 |
CT |
C |
1bp_deletion | frameshift_variant | 38 | A15,A7,A8,B121,B126,B127,B128,B129,B13,B130,B138,B140,B18,B21,B23,B24,B34,B36,B40,B59,B6,B61,B82,B88,C11,C18,C26,C27,C35,C43,C44,C45,C50,C84,D10,D2,D3,D8 |
Chr1:49376186 |
TTC |
T |
2bp_deletion | frameshift_variant | 139 | A13,A19,A20,A21,A22,A24,A25,A3,A4,A5,A7,A8,B1,B101,B102,B103,B105,B106,B107,B108,B109,B110,B111,B114,B115,B117,B12,B120,B121,B122,B125,B127,B129,B134,B139,B14,B140,B15,B16,B17,B2,B22,B25,B26,B27,B28,B3,B32,B34,B35,B38,B41,B42,B43,B44,B45,B46,B47,B48,B49,B53,B54,B55,B56,B57,B58,B60,B65,B66,B67,B7,B72,B74,B75,B77,B79,B81,B83,B84,B85,B87,B9,B90,B91,B93,B94,B95,B96,B97,C10,C11,C12,C13,C14,C15,C17,C19,C2,C20,C27,C28,C29,C33,C34,C37,C41,C44,C46,C47,C48,C49,C51,C54,C57,C6,C60,C61,C62,C65,C66,C67,C68,C7,C70,C71,C72,C73,C74,C75,C79,C80,C81,C82,C85,C86,C9,D1,D2,D9 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。