Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003040`

染色体: Chr01 坐标: 49384449-49397279 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003040`
名称	SmilChr01G003040
描述	uncharacterized SmilChr01G003040
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49384449 - 49397279 / `-`

ID 对照

NCBI Gene ID	`LOC130989354`
GeneID	`130989354`
locus_tag	`-`
NCBI Name	`LOC130989354`
原始查询	`SmilChr01G003040`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838251]; symbol=AT1G16800; hit=AT1G16800; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838251]; symbol=AT1G16800; hit=AT1G16800; species=arabidopsis; confidence=high
Arabidopsis	`AT1G16800` (AT1G16800) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838251] identity=49.6; qcov=0.995; evalue=0; confidence=high
Rice	`Os04g0424200` - identity=41.5; qcov=0.151; evalue=1.57e-68; confidence=weak
GO	GO:0004386 (helicase activity)
KEGG	-
Pfam	PF00580 (UvrD-helicase); PF13086 (AAA_11); PF13087 (AAA_12); PF13245 (AAA_19); PF23576 (SEN1_barrel)
InterPro	-
eggNOG	-
NR	GeneID:130989354

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769296.1`
2	Chromosome	染色体	0.00000	`XP_057769296.1`
3	Centromere	着丝粒	0.00000	`XP_057769296.1`
4	Chromatin	染色质	0.00000	`XP_057769296.1`
5	Telomere	端粒	0.00000	`XP_057769296.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49385515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B66,B87,C82,D6
`Chr1:49385621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,C53
`Chr1:49385655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B61,C43
`Chr1:49385738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B66,B87,C82,D6
`Chr1:49385848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:49386043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr1:49386152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:49386153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,B53
`Chr1:49386219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:49386258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:49386785`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B39
`Chr1:49386785`	`G`	`GA`	1bp_insertion	CDS_variant	1	B39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769296.1

2339 aa

1170

2339

SEN1_barrel

AAA_11

AAA_19

UvrD-helicase

AAA_12

PF23576 SEN1_barrel 1301-1404 aa PF13086 AAA_11 1462-1832 aa PF13245 AAA_19 1485-1827 aa PF00580 UvrD-helicase 1570-1824 aa PF13087 AAA_12 1840-2043 aa

XP_057769304.1

2339 aa

1170

2339

SEN1_barrel

AAA_11

AAA_19

UvrD-helicase

AAA_12

PF23576 SEN1_barrel 1301-1404 aa PF13086 AAA_11 1462-1832 aa PF13245 AAA_19 1485-1827 aa PF00580 UvrD-helicase 1570-1824 aa PF13087 AAA_12 1840-2043 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769296.1`	Pfam	`PF23576`	SEN1_barrel	Domain	1301	1404	3.6e-16	59.7	Helicase SEN1 beta-barrel domain
`XP_057769296.1`	Pfam	`PF13086`	AAA_11	Domain	1462	1832	1.1e-56	193.1	AAA domain
`XP_057769296.1`	Pfam	`PF13245`	AAA_19	Domain	1485	1827	6.4e-08	33.6	AAA domain
`XP_057769296.1`	Pfam	`PF00580`	UvrD-helicase	Domain	1570	1824	4.4e-06	27.3	UvrD/REP helicase N-terminal domain
`XP_057769296.1`	Pfam	`PF13087`	AAA_12	Domain	1840	2043	5.3e-60	203.0	AAA domain
`XP_057769304.1`	Pfam	`PF23576`	SEN1_barrel	Domain	1301	1404	3.6e-16	59.7	Helicase SEN1 beta-barrel domain
`XP_057769304.1`	Pfam	`PF13086`	AAA_11	Domain	1462	1832	1.1e-56	193.1	AAA domain
`XP_057769304.1`	Pfam	`PF13245`	AAA_19	Domain	1485	1827	6.4e-08	33.6	AAA domain
`XP_057769304.1`	Pfam	`PF00580`	UvrD-helicase	Domain	1570	1824	4.4e-06	27.3	UvrD/REP helicase N-terminal domain
`XP_057769304.1`	Pfam	`PF13087`	AAA_12	Domain	1840	2043	5.3e-60	203.0	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009090590.1
TTCAGTTTGTGGATTTACAGTCTTCCTACTTATGCAAAAGTGATGAGCAGACAAGAAATAGGAAAAGAAAAATACATTAGAAAAATTGTTTGTTTCTGGTTCCCCGCGCTGCGGATGATTTGATTGCCTTGTTCTATTTCGCGGGTAAAAAGAAACCCTAATTCTTCCAATTGGAAAAATGGCGAAGAAAGCCGAAGTCAGCAGGAAAGAGTTGTTGCAGCGATGGAGTGTCATCGAGGAAGAGGACGATGTCGATTCTG...

XR_009090586.1
TTCAGTTTGTGGATTTACAGTCTTCCTACTTATGCAAAAGTGATGAGCAGACAAGAAATAGGAAAAGAAAAATACATTAGAAAAATTGTTTGTTTCTGGTTCCCCGCGCTGCGGATGATTTGATTGCCTTGTTCTATTTCGCGGGTAAAAAGAAACCCTAATTCTTCCAATTGGAAAAATGGCGAAGAAAGCCGAAGTCAGCAGGAAAGAGTTGTTGCAGCGATGGAGTGTCATCGAGGAAGAGGACGATGTCGATTCTG...

CDS

2 records

下载 CDS FASTA

LOC130989354
ATGGCGAAGAAAGCCGAAGTCAGCAGGAAAGAGTTGTTGCAGCGATGGAGTGTCATCGAGGAAGAGGACGATGTCGATTCTGCTCATCCCGTCAAACGTCGTCGTCTCCGCCAGCTCAAAGAACAATGGTTTTCAGACGCTTTCAACTTCTTGATACATTTGCCAAAAGACGATCATGTTTGGTGTGGTTATTGGGATCTGATGGGGCCTCTTCTCGAGACATTTTACAATTATCTCAAGGACGAATCCCGAGATTCTCC...

Protein

2 records

下载 Protein FASTA

XP_057769296.1
MAKKAEVSRKELLQRWSVIEEEDDVDSAHPVKRRRLRQLKEQWFSDAFNFLIHLPKDDHVWCGYWDLMGPLLETFYNYLKDESRDSPLKLLWKRISGEMRGCTLCIHQHHQAQEMYQNEYEQSCIGPLLDVLHVLDEERITMHLEDLNDRIGRGVYDASCDYGEVVSVMFEVLMFPILLDDQNLATEFQNFIEAVDNYHDLALDGHQQYPGVYALLFFKSRRVRSIGLRLAGHMGKLRRSTDLDPLQHLLKKCIHILEME...

XP_057769304.1
MAKKAEVSRKELLQRWSVIEEEDDVDSAHPVKRRRLRQLKEQWFSDAFNFLIHLPKDDHVWCGYWDLMGPLLETFYNYLKDESRDSPLKLLWKRISGEMRGCTLCIHQHHQAQEMYQNEYEQSCIGPLLDVLHVLDEERITMHLEDLNDRIGRGVYDASCDYGEVVSVMFEVLMFPILLDDQNLATEFQNFIEAVDNYHDLALDGHQQYPGVYALLFFKSRRVRSIGLRLAGHMGKLRRSTDLDPLQHLLKKCIHILEME...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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