Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003041`

染色体: Chr01 坐标: 49399737-49402649 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003041`
名称	SmilChr01G003041
描述	probable mitochondrial adenine nucleotide transporter BTL1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49399737 - 49402649 / `+`

ID 对照

NCBI Gene ID	`LOC130989454`
GeneID	`130989454`
locus_tag	`-`
NCBI Name	`LOC130989454`
原始查询	`SmilChr01G003041`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable mitochondrial adenine nucleotide transporter BTL1
产物	probable mitochondrial adenine nucleotide transporter BTL1
Arabidopsis	`AT3G20240` (AT3G20240) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:821568] identity=67.4; qcov=0.816; evalue=1.55e-116; confidence=high
Rice	`Os08g0520000` (BTI-1) - identity=71.1; qcov=0.802; evalue=1.54e-120; confidence=high
GO	GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:130989454

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057769455.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057769455.1`
3	Mitochondrion inner membrane	线粒体内膜	0.80000	`XP_057769455.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057769456.1`
5	Nucleus	细胞核	0.00000	`XP_057769455.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49400446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr1:49401504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr1:49401564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B34,C29
`Chr1:49401585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:49401834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B33,C16,C64,C66
`Chr1:49401876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:49402282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:49402361`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B131
`Chr1:49402361`	`G`	`GA`	1bp_insertion	CDS_variant	1	B131
`Chr1:49402385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769455.1

366 aa

183

366

Mito_carr

PF00153 Mito_carr 66-148 aa PF00153 Mito_carr 183-262 aa PF00153 Mito_carr 273-360 aa

XP_057769456.1

293 aa

146

293

Mito_carr

PF00153 Mito_carr 66-148 aa PF00153 Mito_carr 183-262 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769455.1`	Pfam	`PF00153`	Mito_carr	Repeat	66	148	4.5e-65	216.1	Mitochondrial carrier protein
`XP_057769455.1`	Pfam	`PF00153`	Mito_carr	Repeat	183	262	4.5e-65	216.1	Mitochondrial carrier protein
`XP_057769455.1`	Pfam	`PF00153`	Mito_carr	Repeat	273	360	4.5e-65	216.1	Mitochondrial carrier protein
`XP_057769456.1`	Pfam	`PF00153`	Mito_carr	Repeat	66	148	6.5e-42	141.9	Mitochondrial carrier protein
`XP_057769456.1`	Pfam	`PF00153`	Mito_carr	Repeat	183	262	6.5e-42	141.9	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913472.1
ATTTAGTGGTGGAATAAGCTCAAGGTTGCATGCCCTACAGTCCTATTTTTATTTTAAAACATCACTCAAATATTTATCAGTGGTTTTACAATAATAAAAAATTAAAAGAAACCCAAACTGTGTAACTTTTATGGTGAGGTCAAGGTGAGTGGATTTTGAGTATTTCAAGGGGGCAGGAAGAAAAGAAACCCTAGATTAGAGAGCGCCCCTTTTCCTATTAGATTATGACTACTTTATGAATTTTCTCACCCTACATTTTA...

XM_057913473.1
TACAATAATAAAAAATTAAAAGAAACCCAAACTGTGTAACTTTTATGGTGAGGTCAAGGTGAGTGGATTTTGAGTATTTCAAGGGGGCAGGAAGAAAAGAAACCCTAGATTAGAGAGCGCCCCTTTTCCTATTAGATTATGACTACTTTATGAATTTTCTCACCCTACATTTTATTGTTTCCTCACCTCTCCCAACTTTGAAACAAAAAGAGTGTTTTTTTGGTTGGGGCAAAAGAACAAACACCTAACCGGCATAAATA...

CDS

2 records

下载 CDS FASTA

LOC130989454
ATGATCCAAAAGACTCCGGCCCAGACCCAGAAGAAGAGCTACTGCGTGATGGAAGATATTTATGGAGTGGTGATGGCGCCCAAGGCGGACCTTCAGCAACTCCAGCTGCAGCTTCATAACAAGCCCGCTCCTCCACACCTCATGCTTCCTGATATTGGACGAGCACTCGAGGACTTATTGAAGACCAGAGAAGTGGGCGAGTTCCTTAGTGGGGCTTTTGCCGGAGCCATGACCAAAGCTATTCTTGCCCCTCTTGAGAC...

Protein

2 records

下载 Protein FASTA

XP_057769455.1
MIQKTPAQTQKKSYCVMEDIYGVVMAPKADLQQLQLQLHNKPAPPHLMLPDIGRALEDLLKTREVGEFLSGAFAGAMTKAILAPLETIRTRMVVGVGSKNIYGSFVQVVEKQGWQGLWAGNAINMLRIVPTQAIELGTFEYVKRAMTTAQEKWKQNESPSLQIGHLNFNFNFNCLLSWLSPVAVAGAAAGIVSTLACHPLEVLKDRLTVSPDIYPNLSIAVRKIYSEGGIGGLYSGLSPTLIGMLPYSTCYYFMYETMKK...

XP_057769456.1
MIQKTPAQTQKKSYCVMEDIYGVVMAPKADLQQLQLQLHNKPAPPHLMLPDIGRALEDLLKTREVGEFLSGAFAGAMTKAILAPLETIRTRMVVGVGSKNIYGSFVQVVEKQGWQGLWAGNAINMLRIVPTQAIELGTFEYVKRAMTTAQEKWKQNESPSLQIGHLNFNFNFNCLLSWLSPVAVAGAAAGIVSTLACHPLEVLKDRLTVSPDIYPNLSIAVRKIYSEGGIGGLYSGLSPTLIGMLPYSTCYYFMYETMKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器