当前解析结果
SmilChr01G003059| 统一新 Gene ID | SmilChr01G003059 |
|---|---|
| 名称 | SmilChr01G003059 |
| 描述 | uncharacterized membrane protein At1g16860-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49483473 - 49487851 / + |
| NCBI Gene ID | LOC130989647 |
|---|---|
| GeneID | 130989647 |
| locus_tag | - |
| NCBI Name | LOC130989647 |
| 原始查询 | SmilChr01G003059 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0230200; species=rice; confidence=high |
| 产物 | hit=Os08g0230200; species=rice; confidence=high |
| Arabidopsis | AT1G16860 (AT1G16860)Ubiquitin-specific protease family C19-related protein [Source:NCBI gene (formerly Entrezgene);Acc:838257] identity=68.3; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0230200- identity=73; qcov=1; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989647 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057769670.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057769670.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057769670.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057769670.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057769670.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49485839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B51,C20,C44 |
Chr1:49486252 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B18 |
Chr1:49486252 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B18 |
Chr1:49486376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr1:49486539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:49486884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr1:49487260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:49487341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:49487558 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C22 |
Chr1:49487568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
8 records
下载 cDNA FASTA8 records
下载 CDS FASTA8 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。