当前解析结果
SmilChr01G003082| 统一新 Gene ID | SmilChr01G003082 |
|---|---|
| 名称 | SmilChr01G003082 |
| 描述 | calcium-transporting ATPase 9, plasma membrane-type-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49656255 - 49665186 / + |
| NCBI Gene ID | LOC130989923 |
|---|---|
| GeneID | 130989923 |
| locus_tag | - |
| NCBI Name | LOC130989923 |
| 原始查询 | SmilChr01G003082 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium-transporting ATPase 9, plasma membrane-type-like |
| 产物 | calcium-transporting ATPase 9%2C plasma membrane-type-like |
| Arabidopsis | AT3G21180 (ACA9)autoinhibited Ca(2+)-ATPase 9 [Source:NCBI gene (formerly Entrezgene);Acc:821671] identity=71.3; qcov=0.991; evalue=0; confidence=high |
| Rice | Os04g0605500 (ACA11)- identity=69.8; qcov=0.958; evalue=0; confidence=high |
| GO | GO:0005388 (P-type calcium transporter activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport) |
| KEGG | - |
| Pfam | PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF12515 (CaATP_NAI); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989923 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770078.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057770078.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057770078.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770078.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770078.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49656699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C53 |
Chr1:49656750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr1:49657445 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A11,B132,B60,B62,B66,C27,C61,C77,C85 |
Chr1:49657983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:49659178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr1:49661481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:49662640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B57 |
Chr1:49662942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B139,C4 |
Chr1:49663512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B79,C43,C71,D1 |
Chr1:49663800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C53 |
Chr1:49664523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,B29 |
Chr1:49664901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770078.1PF12515
CaATP_NAI 36-78 aa
PF00690
Cation_ATPase_N 144-212 aa
PF00122
E1-E2_ATPase 318-384 aa
PF00702
Hydrolase 508-831 aa
PF13246
Cation_ATPase 548-720 aa
PF00689
Cation_ATPase_C 902-1079 aa
XP_057770087.1PF12515
CaATP_NAI 36-78 aa
PF00690
Cation_ATPase_N 144-212 aa
PF00122
E1-E2_ATPase 264-361 aa
PF00702
Hydrolase 485-808 aa
PF13246
Cation_ATPase 525-697 aa
PF00689
Cation_ATPase_C 879-1056 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770078.1 |
Pfam | PF12515 |
CaATP_NAI | Family | 36 | 78 | 3.9e-16 | 59.0 | Ca2+-ATPase N terminal autoinhibitory domain |
XP_057770078.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 144 | 212 | 1.7e-15 | 57.1 | Cation transporter/ATPase, N-terminus |
XP_057770078.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 318 | 384 | 5e-15 | 55.9 | P-type ATPase actuator domain |
XP_057770078.1 |
Pfam | PF00702 |
Hydrolase | Domain | 508 | 831 | 1.7e-14 | 55.4 | haloacid dehalogenase-like hydrolase |
XP_057770078.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 548 | 720 | 1.1e-28 | 101.0 | P-type ATPase, cytoplasmic domain N |
XP_057770078.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 902 | 1079 | 6.2e-43 | 147.3 | Cation transporting ATPase, C-terminus |
XP_057770087.1 |
Pfam | PF12515 |
CaATP_NAI | Family | 36 | 78 | 3.8e-16 | 59.0 | Ca2+-ATPase N terminal autoinhibitory domain |
XP_057770087.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 144 | 212 | 1.6e-15 | 57.2 | Cation transporter/ATPase, N-terminus |
XP_057770087.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 264 | 361 | 1e-19 | 70.9 | P-type ATPase actuator domain |
XP_057770087.1 |
Pfam | PF00702 |
Hydrolase | Domain | 485 | 808 | 1.6e-14 | 55.5 | haloacid dehalogenase-like hydrolase |
XP_057770087.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 525 | 697 | 1e-28 | 101.1 | P-type ATPase, cytoplasmic domain N |
XP_057770087.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 879 | 1056 | 6e-43 | 147.4 | Cation transporting ATPase, C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。