Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003091`

染色体: Chr01 坐标: 49724672-49735047 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003091`
名称	SmilChr01G003091
描述	uncharacterized SmilChr01G003091
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49724672 - 49735047 / `+`

ID 对照

NCBI Gene ID	`LOC131009359`
GeneID	`131009359`
locus_tag	`-`
NCBI Name	`LOC131009359`
原始查询	`SmilChr01G003091`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os06g0704400; species=rice; confidence=weak
产物	hit=Os06g0704400; species=rice; confidence=weak
Arabidopsis	`AT1G06740` (MUG3) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=25.3; qcov=0.223; evalue=4.56e-57; confidence=weak
Rice	`Os06g0704400` - identity=31.4; qcov=0.262; evalue=1.91e-104; confidence=weak
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding); GO:0015074 (DNA integration)
KEGG	-
Pfam	PF00078 (RVT_1); PF00665 (rve); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2)
InterPro	-
eggNOG	-
NR	GeneID:131009359

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792640.1`
2	Cytoplasm	细胞质	0.40000	`XP_057792640.1`
3	Chromosome	染色体	0.00000	`XP_057792640.1`
4	Centromere	着丝粒	0.00000	`XP_057792640.1`
5	Chromatin	染色质	0.00000	`XP_057792640.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49724678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C9
`Chr1:49724712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A9,C67
`Chr1:49724728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B26,B92,B93,D6
`Chr1:49725853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,C5
`Chr1:49725859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B111,C47,C51,C74
`Chr1:49725866`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C63
`Chr1:49725866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr1:49725897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B71,C62
`Chr1:49725902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B140
`Chr1:49725940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C79,D7
`Chr1:49725989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B124,B22,B98
`Chr1:49726005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B20,C29,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792640.1

2683 aa

1342

2683

DBD_Tnp_Mut

MULE

SWIM

RVT_1

RT_RNaseH_2

RT_RNaseH

Integrase_H2C2

rve

PF03108 DBD_Tnp_Mut 874-930 aa PF10551 MULE 1072-1167 aa PF04434 SWIM 1319-1349 aa PF00078 RVT_1 1871-2026 aa PF17919 RT_RNaseH_2 2090-2188 aa PF17917 RT_RNaseH 2118-2218 aa PF17921 Integrase_H2C2 2318-2375 aa PF00665 rve 2396-2489 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792640.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	874	930	1e-07	32.2	MuDR family transposase
`XP_057792640.1`	Pfam	`PF10551`	MULE	Domain	1072	1167	1.8e-16	61.0	MULE transposase domain
`XP_057792640.1`	Pfam	`PF04434`	SWIM	Domain	1319	1349	1.7e-09	37.7	SWIM zinc finger
`XP_057792640.1`	Pfam	`PF00078`	RVT_1	Domain	1871	2026	1.5e-29	104.0	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057792640.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	2090	2188	3.2e-32	111.3	RNase H-like domain found in reverse transcriptase
`XP_057792640.1`	Pfam	`PF17917`	RT_RNaseH	Domain	2118	2218	3.5e-37	127.5	RNase H-like domain found in reverse transcriptase
`XP_057792640.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	2318	2375	1e-11	45.5	Integrase zinc binding domain
`XP_057792640.1`	Pfam	`PF00665`	rve	Domain	2396	2489	1.1e-15	58.4	Integrase core domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936657.1
ATGCCCCGTTCTTCTCGTACAGGCGTATTAGTTTTTGATCCAGAAATCGAGAAAACCGCACGAAAGTTGAAGAAGCAAGCTAAGGAGTGGAAAAAGAAATCCAATTCTTCTCCACCGAGTCTTGAGGATCAAAAAGAAATTGAAGATCCAATGGGTGACCGTAACAATAGGGATGAGGAGAACGATAGAGAGATCGTTGATCCTCGACAGGAACCACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAGCAATCGCCC...

CDS

1 records

下载 CDS FASTA

LOC131009359
ATGCCCCGTTCTTCTCGTACAGGCGTATTAGTTTTTGATCCAGAAATCGAGAAAACCGCACGAAAGTTGAAGAAGCAAGCTAAGGAGTGGAAAAAGAAATCCAATTCTTCTCCACCGAGTCTTGAGGATCAAAAAGAAATTGAAGATCCAATGGGTGACCGTAACAATAGGGATGAGGAGAACGATAGAGAGATCGTTGATCCTCGACAGGAACCACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAGCAATCGCCC...

Protein

1 records

下载 Protein FASTA

XP_057792640.1
MPRSSRTGVLVFDPEIEKTARKLKKQAKEWKKKSNSSPPSLEDQKEIEDPMGDRNNRDEENDREIVDPRQEPPQLIRELGRHRSNRPLCIVLPAINGNAEIRPGFIQVLPKFGDLPGESAHKHLAEFDLVCSTLRPHGFTENNLRLLTFSHTLQGRARDWLFDLPPGSIRTWGDLEEQFLRKFFPESRAANLRMAISSIKQKKAESLADYWERFQQLCRKCPDHGFSDYQLLTNYFYRGMSSFDRKIVDAACGGSLTNKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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