Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003096`

染色体: Chr01 坐标: 49780127-49784144 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003096`
名称	SmilChr01G003096
描述	receptor-like protein kinase
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49780127 - 49784144 / `-`

ID 对照

NCBI Gene ID	`LOC130990016`
GeneID	`130990016`
locus_tag	`-`
NCBI Name	`LOC130990016`
原始查询	`SmilChr01G003096`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein kinase
产物	receptor-like protein kinase
Arabidopsis	`AT1G73080` (PEPR1) PEP1 receptor 1 [Source:NCBI gene (formerly Entrezgene);Acc:843639] identity=50.5; qcov=1; evalue=0; confidence=high
Rice	`Os08g0446200` - identity=50; qcov=0.98; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130990016

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057770198.1`
2	Nucleus	细胞核	0.00000	`XP_057770198.1`
3	Chromosome	染色体	0.00000	`XP_057770198.1`
4	Centromere	着丝粒	0.00000	`XP_057770198.1`
5	Chromatin	染色质	0.00000	`XP_057770198.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49780405`	`C`	`CA`	1bp_insertion	frameshift_variant	2	B25,B93
`Chr1:49780405`	`C`	`CA`	1bp_insertion	CDS_variant	2	B25,B93
`Chr1:49780579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,D11
`Chr1:49780757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:49780824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,D4
`Chr1:49780971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C48
`Chr1:49781068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B7,B79,C45
`Chr1:49781302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:49781309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:49781333`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C74
`Chr1:49781333`	`GA`	`G`	1bp_deletion	CDS_variant	1	C74
`Chr1:49781420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770198.1

1105 aa

552

1105

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 21-61 aa PF00560 LRR_1 89-111 aa PF00560 LRR_1 114-135 aa PF00560 LRR_1 137-157 aa PF00560 LRR_1 161-183 aa PF00560 LRR_1 186-207 aa PF00560 LRR_1 257-278 aa PF00560 LRR_1 305-326 aa PF00560 LRR_1 424-444 aa PF13855 LRR_8 472-530 aa PF00560 LRR_1 496-517 aa PF00560 LRR_1 519-541 aa PF00560 LRR_1 543-565 aa PF00560 LRR_1 567-589 aa PF00560 LRR_1 592-613 aa PF00560 LRR_1 642-664 aa PF00069 Pkinase 818-1020 aa PF07714 PK_Tyr_Ser-Thr 820-1088 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770198.1`	Pfam	`PF08263`	LRRNT_2	Family	21	61	8.7e-08	33.0	Leucine rich repeat N-terminal domain
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	89	111	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	114	135	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	137	157	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	161	183	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	186	207	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	257	278	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	305	326	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	424	444	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF13855`	LRR_8	Repeat	472	530	5.4e-48	161.3	Leucine rich repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	496	517	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	519	541	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	543	565	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	567	589	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	592	613	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00560`	LRR_1	Repeat	642	664	2.1e-66	206.1	Leucine Rich Repeat
`XP_057770198.1`	Pfam	`PF00069`	Pkinase	Domain	818	1020	4.6e-40	138.4	Protein kinase domain
`XP_057770198.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	820	1088	1.5e-33	116.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914215.1
ATGAGAGTGAAGATGCGAGTCGGCATATTCAGTAAAAGTTCAACAAAATATGAGAGAATGTCTCTAAATTAAACTGAAAGAAAAGTGAAAACGCGTTGAGAGTTGAAACAAGGTCTTCACTGACATGACAGCAGTCAACAATTAGTCACTGCTGCGCCAACTATCACATTTACGTTTGTTTTCGCGGCAGTATTTATCTTTTCAAACCTCTGTCAGCGTTCACACTCGATATGAAATCCATATCGTGAAAGAGGTCGAAC...

CDS

1 records

下载 CDS FASTA

LOC130990016
ATGAAAATTTGCTGGAGCTGTTTTTGCCTGATTTTCTTGCTGTCTGCTGTTAATGCTGTGAATTTAGAAGGTACGACTCTGCTGTCACTTGTTACGCATTGGAGAGTTTTACCTCCACCCATCAAGTTCAGCTGGAATGCTTCTGATTCCACGCCCTGTTCATGGCTTGGTGTGAAATGCAGCCCTAGCAACATCGTTGTTGAGTTGAACATGTCTGGTTTCTCGATTTCAGGCCCATTAGGGCCAGAAATTGCGTATTT...

Protein

1 records

下载 Protein FASTA

XP_057770198.1
MKICWSCFCLIFLLSAVNAVNLEGTTLLSLVTHWRVLPPPIKFSWNASDSTPCSWLGVKCSPSNIVVELNMSGFSISGPLGPEIAYLKHLESIDLSYNSFSGRIPSVLGNCSYLESLDLSNNFFHGEIPENLGNLVRLRFLSLWSNSLGGKIPESLFKIPSLTLIYLNNNKLTGAIPSGLGNLSSVESLYLNNNLLLGTIPSSIGNCSALQELYLNDNLFEGALPDSLNNVGRLQVLYVENNKLEDRIPSLDSCKELESL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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