当前解析结果
SmilChr01G003109| 统一新 Gene ID | SmilChr01G003109 |
|---|---|
| 名称 | SmilChr01G003109 |
| 描述 | protein STRUBBELIG-RECEPTOR FAMILY 6-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49905846 - 49911205 / + |
| NCBI Gene ID | LOC130990085 |
|---|---|
| GeneID | 130990085 |
| locus_tag | - |
| NCBI Name | LOC130990085 |
| 原始查询 | SmilChr01G003109 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein STRUBBELIG-RECEPTOR FAMILY 6-like |
| 产物 | protein STRUBBELIG-RECEPTOR FAMILY 6-like |
| Arabidopsis | AT1G53730 (SRF6)STRUBBELIG-receptor family 6 [Source:NCBI gene (formerly Entrezgene);Acc:841811] identity=62; qcov=1.02; evalue=0; confidence=high |
| Rice | Os10g0389800- identity=61.6; qcov=0.98; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990085 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770277.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770277.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770277.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770277.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770277.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49907319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:49907508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:49907840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B51,B89,D8 |
Chr1:49907844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:49908189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B25,B8,B93,C57 |
Chr1:49908190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:49908709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr1:49908726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B25,B8,B93,C57 |
Chr1:49908780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:49908797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B104,D10 |
Chr1:49908799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B133,B79,C47,C76 |
Chr1:49908991 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770277.1PF08263
LRRNT_2 28-68 aa
PF00560
LRR_1 117-137 aa
PF13855
LRR_8 141-200 aa
PF13516
LRR_6 163-178 aa
PF00560
LRR_1 165-187 aa
PF00560
LRR_1 212-232 aa
PF00069
Pkinase 411-673 aa
PF07714
PK_Tyr_Ser-Thr 413-675 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770277.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 68 | 4.1e-07 | 30.9 | Leucine rich repeat N-terminal domain |
XP_057770277.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 117 | 137 | 1.7e-12 | 45.6 | Leucine Rich Repeat |
XP_057770277.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 141 | 200 | 9e-09 | 35.7 | Leucine rich repeat |
XP_057770277.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 163 | 178 | 4.2e-06 | 27.1 | Leucine Rich repeat |
XP_057770277.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 165 | 187 | 1.7e-12 | 45.6 | Leucine Rich Repeat |
XP_057770277.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 212 | 232 | 1.7e-12 | 45.6 | Leucine Rich Repeat |
XP_057770277.1 |
Pfam | PF00069 |
Pkinase | Domain | 411 | 673 | 2e-37 | 129.7 | Protein kinase domain |
XP_057770277.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 413 | 675 | 5e-40 | 138.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。