当前解析结果
SmilChr01G003132| 统一新 Gene ID | SmilChr01G003132 |
|---|---|
| 名称 | SmilChr01G003132 |
| 描述 | O-fucosyltransferase 36-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 50141513 - 50144436 / - |
| NCBI Gene ID | LOC130990229 |
|---|---|
| GeneID | 130990229 |
| locus_tag | - |
| NCBI Name | LOC130990229 |
| 原始查询 | SmilChr01G003132 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | O-fucosyltransferase 36-like |
| 产物 | O-fucosyltransferase 36-like |
| Arabidopsis | AT5G50420 (AT5G50420)O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835110] identity=61.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0572600- identity=55.7; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0036066 (protein O-linked glycosylation via fucose); GO:0046922 (peptide-O-fucosyltransferase activity) |
| KEGG | smil00514 (Other types of O-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF10250 (O-FucT); PF28573 (OFUT_helical_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990229 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057770446.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057770446.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770446.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770446.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770446.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:50141959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:50142660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr1:50143476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B78,C2,C42 |
Chr1:50143745 |
GTA |
G |
2bp_deletion | frameshift_variant | 1 | D10 |
Chr1:50143745 |
GTA |
G |
2bp_deletion | CDS_variant | 1 | D10 |
Chr1:50143847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:50144060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B66,C32,C68,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770446.1PF28573
OFUT_helical_N 101-179 aa
PF10250
O-FucT 246-546 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770446.1 |
Pfam | PF28573 |
OFUT_helical_N | Domain | 101 | 179 | 1.2e-25 | 90.4 | O-fucosyltransferase N-terminal helical domain |
XP_057770446.1 |
Pfam | PF10250 |
O-FucT | Family | 246 | 546 | 1.1e-09 | 39.1 | GDP-fucose protein O-fucosyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。