Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003149`

染色体: Chr01 坐标: 50292902-50301183 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003149`
名称	SmilChr01G003149
描述	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50292902 - 50301183 / `-`

ID 对照

NCBI Gene ID	`LOC130990381`
GeneID	`130990381`
locus_tag	`-`
NCBI Name	`LOC130990381`
原始查询	`SmilChr01G003149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like
产物	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like
Arabidopsis	`AT3G14270` (FAB1B) phosphatidylinositol-4-phosphate 5-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820647] identity=59; qcov=1.03; evalue=0; confidence=high
Rice	`Os08g0428900` (P0479C08.109) - identity=45.1; qcov=0.865; evalue=0; confidence=high
GO	GO:0000285 (1-phosphatidylinositol-3-phosphate 5-kinase activity); GO:0005524 (ATP binding); GO:0010008 (endosome membrane); GO:0046854 (phosphatidylinositol phosphate biosynthetic process); GO:0046872 (metal ion binding)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00118 (Cpn60_TCP1); PF01363 (FYVE); PF01504 (PIP5K)
InterPro	-
eggNOG	-
NR	GeneID:130990381

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057770597.1`
2	Golgi apparatus	高尔基体	0.20000	`XP_057770597.1`
3	Endosome	内体	0.20000	`XP_057770597.1`
4	Nucleus	细胞核	0.00000	`XP_057770597.1`
5	Chromosome	染色体	0.00000	`XP_057770597.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50293183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,C65
`Chr1:50293259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B74,C13,C17,C27
`Chr1:50293265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B14,C26,C77
`Chr1:50293454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:50293655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr1:50293695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,B105
`Chr1:50293698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:50294093`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B20
`Chr1:50294093`	`AG`	`A`	1bp_deletion	CDS_variant	1	B20
`Chr1:50294147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B100,B102,B51,D7
`Chr1:50294260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B37,B55,B73,C24
`Chr1:50294350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770597.1

1804 aa

902

1804

FYVE

Cpn60_TCP1

PIP5K

PF01363 FYVE 33-101 aa PF00118 Cpn60_TCP1 411-655 aa PF01504 PIP5K 1545-1711 aa PF01504 PIP5K 1710-1767 aa

XP_057770606.1

1795 aa

898

1795

FYVE

Cpn60_TCP1

PIP5K

PF01363 FYVE 24-92 aa PF00118 Cpn60_TCP1 402-646 aa PF01504 PIP5K 1536-1702 aa PF01504 PIP5K 1701-1758 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770597.1`	Pfam	`PF01363`	FYVE	Domain	33	101	1.1e-17	64.6	FYVE zinc finger
`XP_057770597.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	411	655	7.3e-32	111.4	TCP-1/cpn60 chaperonin family
`XP_057770597.1`	Pfam	`PF01504`	PIP5K	Family	1545	1711	5.5e-44	151.3	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057770597.1`	Pfam	`PF01504`	PIP5K	Family	1710	1767	5.5e-44	151.3	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057770606.1`	Pfam	`PF01363`	FYVE	Domain	24	92	1.1e-17	64.6	FYVE zinc finger
`XP_057770606.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	402	646	7.2e-32	111.4	TCP-1/cpn60 chaperonin family
`XP_057770606.1`	Pfam	`PF01504`	PIP5K	Family	1536	1702	5.5e-44	151.3	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057770606.1`	Pfam	`PF01504`	PIP5K	Family	1701	1758	5.5e-44	151.3	Phosphatidylinositol-4-phosphate 5-Kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914623.1
AGCACACACAATTCATTCAGTCGCTTTCTTCTCAATCAAAATTTCCTACCATTATTATAAAACATGCAATCTCTGACGACGAAGAATCATTTCGAGAAATTAGTTAATTAATTGTATTAATTCACGCCCCATTATGATTAATCTTGGTGATTCAACTTCCGATTTCCCATTTATTTGAGGATCAGGAAATTAGGGCAGACATTCGCTGTTTATCTTGAATGAGAAGGGAACAACTAATTCACCCCGAAATCCCGCGTTTT...

XM_057914614.1
TTAGTTTTCTTTGAGAGATCGATCTTGGATTCCTTTTAGTTATTATTAATTTGTTCACTGTGGAATGTGTGGGTAGAGTTGCAAGTTTGGGTTAGTTGCTCGGTGCTAGAATTTGGGATTTAGGGTTATTAGTTCTTGATCAAGGAAATTGCGATTTGGGTTTTGTGCAAAATTTTGAGTGGATCAACTTTGTTGCAGCTGTTTTAGTCATTGAATTTGAGTGTTGTAAGCTGAAGAAAGGATATAGTTTGAATTTGAGT...

CDS

2 records

下载 CDS FASTA

LOC130990381
ATGTATAAAGGCTTACTTAAATCTTGGATGCCATGGCGGTCAGAGCCTGCACATGTGTCGAGGGATTTCTGGATGCCCGACCAGAGCTGCAGGGTGTGCTACGAGTGTGATTCACAGTTCACCTTGTTTAACCGTAGGCATCATTGTCGTCTCTGTGGTCGGATTTTCTGTGCCAAGTGTACTTCGAATTGGCTTCCTATTGGACATAGTGAGCCAAAGATTTCACTAGAAGAGTGGGATAAGATTAGGGTATGCAATTA...

LOC130990381
ATGGACGAGTCTGATAGGACATTTTCTGATCTGGTAGGCTTACTTAAATCTTGGATGCCATGGCGGTCAGAGCCTGCACATGTGTCGAGGGATTTCTGGATGCCCGACCAGAGCTGCAGGGTGTGCTACGAGTGTGATTCACAGTTCACCTTGTTTAACCGTAGGCATCATTGTCGTCTCTGTGGTCGGATTTTCTGTGCCAAGTGTACTTCGAATTGGCTTCCTATTGGACATAGTGAGCCAAAGATTTCACTAGAAGA...

Protein

2 records

下载 Protein FASTA

XP_057770597.1
MDESDRTFSDLVGLLKSWMPWRSEPAHVSRDFWMPDQSCRVCYECDSQFTLFNRRHHCRLCGRIFCAKCTSNWLPIGHSEPKISLEEWDKIRVCNYCFKQREKEQWGKQLIVAVDDGLQVDLQDASCTSPSATSFLSTRSSGTCGSSSTTFVSVPQSAAPSPMQSPSTEADLDRQNVGAAKINDVAVVTEEQNLSEDQFGYFQNRSDDDDDEYGMSQLGPIASDFSQVNGYYGPVKFEDINSDYNSRKVHPDGDAVDSKS...

XP_057770606.1
MYKGLLKSWMPWRSEPAHVSRDFWMPDQSCRVCYECDSQFTLFNRRHHCRLCGRIFCAKCTSNWLPIGHSEPKISLEEWDKIRVCNYCFKQREKEQWGKQLIVAVDDGLQVDLQDASCTSPSATSFLSTRSSGTCGSSSTTFVSVPQSAAPSPMQSPSTEADLDRQNVGAAKINDVAVVTEEQNLSEDQFGYFQNRSDDDDDEYGMSQLGPIASDFSQVNGYYGPVKFEDINSDYNSRKVHPDGDAVDSKSTASSPLRYS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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