Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003165`

染色体: Chr01 坐标: 50455202-50458768 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003165`
名称	SmilChr01G003165
描述	uncharacterized SmilChr01G003165
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50455202 - 50458768 / `-`

ID 对照

NCBI Gene ID	`LOC130990520`
GeneID	`130990520`
locus_tag	`-`
NCBI Name	`LOC130990520`
原始查询	`SmilChr01G003165`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820637]; symbol=AT3G14200; hit=AT3G14200; species=arabidopsis; confidence=high
产物	Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820637]; symbol=AT3G14200; hit=AT3G14200; species=arabidopsis; confidence=high
Arabidopsis	`AT3G14200` (AT3G14200) Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820637] identity=50; qcov=0.986; evalue=7.54e-58; confidence=high
Rice	`Os06g0195800` (OsDjC53) - identity=59.4; qcov=0.498; evalue=5.45e-31; confidence=medium
GO	-
KEGG	-
Pfam	PF00226 (DnaJ)
InterPro	-
eggNOG	-
NR	GeneID:130990520

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770733.1`
2	Cytoplasm	细胞质	0.80000	`XP_057770733.1`
3	Cytosol	细胞质基质	0.80000	`XP_057770733.1`
4	Chromosome	染色体	0.00000	`XP_057770733.1`
5	Centromere	着丝粒	0.00000	`XP_057770733.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50455706`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B35,B89
`Chr1:50455706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,B89
`Chr1:50455711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B132,B25,B98
`Chr1:50455719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:50456490`	`GT`	`G`	1bp_deletion	frameshift_variant	3	B114,B65,C30
`Chr1:50456490`	`GT`	`G`	1bp_deletion	CDS_variant	3	B114,B65,C30
`Chr1:50456507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,A8,B79,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770733.1

214 aa

107

214

DnaJ

PF00226 DnaJ 10-78 aa

XP_057770738.1

213 aa

106

213

DnaJ

PF00226 DnaJ 10-78 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770733.1`	Pfam	`PF00226`	DnaJ	Domain	10	78	1.4e-19	70.7	DnaJ domain
`XP_057770738.1`	Pfam	`PF00226`	DnaJ	Domain	10	78	1.4e-19	70.7	DnaJ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914750.1
TCGTCTACGCAAGTGCAGAATCACAATACATTTCATCAAATAATCCCAAAAACGTTGAAAAAAAAAGAAAAGCAAGAGAACCAAAAACAGTAAATGGAGAAGTTTCTGGAGACAGACTACTATAAAAAATATCTACCTCAACATCCAATCCCAGCCGTTAAATCCCTTAAAACCCACAAATTTCCTTTTCTTTTAGCATTTATTTGTTTTCTTGGAATTATTCATGACATTCACTTCTAATTCAGTATAAAAACACCATG...

XM_057914755.1
TCACTTCTAATTCAGTATAAAAACACCATGCTCCTTAATATGATTACCTCTGCTTCTGGAGACTTCTCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGTTTGTTTCTCTCTCTGCAACACTTGCAAATGGTTGCGTCTCGTAGTGATCTTTTAGCATTTATGGAGTAGTAACAAATAATAGTATTATTTTTGTATTGAAAAATATTTTAGTATGTGTACTCACTTTCTACTATATATGCATAATAAGC...

CDS

2 records

下载 CDS FASTA

LOC130990520
ATGGCTGGTGGAGAAGATAAAAGCAGTGATTTTTATGCTGTTTTGGAGTTGAAAAAGGAATGCACATCAGCAGAGCTAAGGCATGCCTACAAGAAACTAGCTCTGAAATGGCATCCGGATCGGCTCTCTGCTTCTGGGAATTTGAAGTATGTAGATGAGGCCAAGAAGAAATTTCAAGCTATCCAGCAAGCATATTCAGTGCTTTCAGACAGCAACAAAAGGTTTCTGTACGATGTAGGAGTTTATGACTGCAACGACGA...

Protein

2 records

下载 Protein FASTA

XP_057770733.1
MAGGEDKSSDFYAVLELKKECTSAELRHAYKKLALKWHPDRLSASGNLKYVDEAKKKFQAIQQAYSVLSDSNKRFLYDVGVYDCNDDEDNNGMGEFLNEMATMMSQTKCQEGGNETLEELQQLFDELFESDIDASGSSSRSATPPTTCTSSSSSASGNEAYGISNKRNSNETRLGNLEAGASHFEGFCLGTGGASGKHSGGESSRRKNARIGRR

XP_057770738.1
MAGGEDKSSDFYAVLELKKECTSAELRHAYKKLALKWHPDRLSASGNLKYVDEAKKKFQAIQQAYSVLSDSNKRFLYDVGVYDCNDDEDNNGMGEFLNEMATMMSQTKCQGGNETLEELQQLFDELFESDIDASGSSSRSATPPTTCTSSSSSASGNEAYGISNKRNSNETRLGNLEAGASHFEGFCLGTGGASGKHSGGESSRRKNARIGRR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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