Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003178`

染色体: Chr01 坐标: 50563449-50566614 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003178`
名称	SmilChr01G003178
描述	uncharacterized SmilChr01G003178
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50563449 - 50566614 / `-`

ID 对照

NCBI Gene ID	`LOC130990591`
GeneID	`130990591`
locus_tag	`-`
NCBI Name	`LOC130990591`
原始查询	`SmilChr01G003178`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-oxoglutarate-dependent dioxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820633]; symbol=AT3G14160; hit=AT3G14160; species=arabidopsis; confidence=high
产物	2-oxoglutarate-dependent dioxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820633]; symbol=AT3G14160; hit=AT3G14160; species=arabidopsis; confidence=high
Arabidopsis	`AT3G14160` (AT3G14160) 2-oxoglutarate-dependent dioxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820633] identity=52.9; qcov=0.655; evalue=1.23e-102; confidence=high
Rice	`Os03g0816500` - identity=57.4; qcov=0.567; evalue=4.14e-101; confidence=medium
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0008198 (ferrous iron binding); GO:0035513 (oxidative RNA demethylation); GO:0035515 (oxidative RNA demethylase activity); GO:0035516 (broad specificity oxidative DNA demethylase activity); GO:0035552 (GO:0035552)
KEGG	-
Pfam	PF13532 (2OG-FeII_Oxy_2)
InterPro	-
eggNOG	-
NR	GeneID:130990591

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770797.1`
2	Cytoplasm	细胞质	1.00000	`XP_057770797.1`
3	Cytosol	细胞质基质	0.80000	`XP_057770797.1`
4	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057770797.1`
5	Chromosome	染色体	0.00000	`XP_057770804.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50564345`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C59
`Chr1:50564355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr1:50565341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770797.1

479 aa

240

479

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 279-477 aa

XP_057770799.1

478 aa

239

478

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 278-476 aa

XP_057770804.1

468 aa

234

468

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 249-466 aa

XP_057770809.1

467 aa

234

467

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 248-465 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770797.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	279	477	2.2e-43	149.5	2OG-Fe(II) oxygenase superfamily
`XP_057770799.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	278	476	2.1e-43	149.5	2OG-Fe(II) oxygenase superfamily
`XP_057770804.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	249	466	1.3e-46	160.0	2OG-Fe(II) oxygenase superfamily
`XP_057770809.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	248	465	1.3e-46	160.0	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057914821.1
TTTTTCTTTTTTTAATTTATTAGTTAGAGGTTAAAATGATAATTTTTTAATTTAATCTAGAATTATATTTTATCTATCAAACAAAAATACTAATTATCTTAAGTTTATATCTTACCTATCAAACCCATATAAATAATAATAATTTCACTCAATCCATATTATTTTATCAAGATTTTACTTATTACACTTTATCTAATTTAGCAAATTATTTGTTGATATTTACAATCTTAAGACTGAAAATTGTAAATAAAGATATTTGG...

XM_057914816.1
TTTCCTTAATTTGCATTGGCACCAAAAACAGTTCATACATAAGAAACTCTTCAGCTGTCAGTTCTACTTTGCTAGTCTTTTCTAATTCCCCAAAACAGTTGTTATATATTCTATACTTTTTGACATCCTTCAATTTCCCAAGTTAATTGTTTATCCCTCGACCTGTATACTCCAATTTGTGTATCTACAAACCCTAAATAGTGTTAATTGCCGTTGTATTAGTTAACGCAAGATGAACCGTAGCAGCGGCGGCAACCGCC...

CDS

4 records

下载 CDS FASTA

LOC130990591
ATGAACCGTAGCAGCGGCGGCAACCGCCGTGGCGGTGGCAATCGTGGCGGAGGACGGCACTATGCCCCCAGAGGGCGATCGGCGCAACCCACGCGTCAATGGGTCGTTCGTGGGGTTGGGGCTGGAGCTCATCTGGATGATGCTTCTTCCGGAAGTGGATCTTCCGAGATTGGAAGGAGAAATTCCGAAACAGCATCCGTTGATAGTGTAACAAGGAAGTTTGATGCTATGTCGTCTTCAGAATATCCAAGTGAACTCAA...

Protein

4 records

下载 Protein FASTA

XP_057770797.1
MNRSSGGNRRGGGNRGGGRHYAPRGRSAQPTRQWVVRGAVGAGAHLDDASSGSGSSEIGRRNSETASVDSVTRKFDAMSSSEYPSELNPESHGSLNEPPNDGNLKGVQNVPETEPTLLNVTPIGPCDDNYFPSLPTNPELNESSTSIKSRDQNLENCSPSRFIPTSPETVGCQLSPEVQSGKTTSPEGTSGETKHDSPDSKHDKFSFDICEERSSNLVKLKTPLLLKNRAKRIEERRMQEDNIKDYRPGMILLKGYLSLE...

XP_057770799.1
MNRSSGGNRRGGGNRGGGRHYAPRGRSAQPTRQWVVRGVGAGAHLDDASSGSGSSEIGRRNSETASVDSVTRKFDAMSSSEYPSELNPESHGSLNEPPNDGNLKGVQNVPETEPTLLNVTPIGPCDDNYFPSLPTNPELNESSTSIKSRDQNLENCSPSRFIPTSPETVGCQLSPEVQSGKTTSPEGTSGETKHDSPDSKHDKFSFDICEERSSNLVKLKTPLLLKNRAKRIEERRMQEDNIKDYRPGMILLKGYLSLEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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