当前解析结果
SmilChr01G003183| 统一新 Gene ID | SmilChr01G003183 |
|---|---|
| 名称 | SmilChr01G003183 |
| 描述 | uncharacterized SmilChr01G003183 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 50600254 - 50600910 / - |
| NCBI Gene ID | LOC131009525 |
|---|---|
| GeneID | 131009525 |
| locus_tag | - |
| NCBI Name | LOC131009525 |
| 原始查询 | SmilChr01G003183 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dehydroascorbate reductase [Source:NCBI gene (formerly Entrezgene);Acc:838544]; symbol=DHAR1; hit=AT1G19570; species=arabidopsis; confidence=medium |
| 产物 | dehydroascorbate reductase [Source:NCBI gene (formerly Entrezgene);Acc:838544]; symbol=DHAR1; hit=AT1G19570; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G19570 (DHAR1)dehydroascorbate reductase [Source:NCBI gene (formerly Entrezgene);Acc:838544] identity=61.6; qcov=0.514; evalue=3.02e-47; confidence=medium |
| Rice | Os05g0116100 (OsDHAR1)- identity=63.4; qcov=0.427; evalue=9.88e-37; confidence=low |
| GO | GO:0010731 (protein glutathionylation); GO:0033355 (ascorbate glutathione cycle); GO:0045174 (glutathione dehydrogenase (ascorbate) activity); GO:0098869 (cellular oxidant detoxification) |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3); PF22441 (CLIC-like_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009525 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057792909.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057792909.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792909.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792909.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792909.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:50600376 |
GC |
* |
1bp_deletion | CDS_variant | 1 | B13 |
Chr1:50600393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B107,B37,B63,B96 |
Chr1:50600408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr1:50600429 |
G |
GA |
1bp_insertion | frameshift_variant | 6 | A15,A18,B101,B113,C63,C71 |
Chr1:50600434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr1:50600441 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr1:50600461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,C69,C70,D3 |
Chr1:50600490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B137,B70,B81,C75 |
Chr1:50600498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr1:50600502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,D10 |
Chr1:50600526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:50600532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,B73,B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792909.1PF22441
CLIC-like_N 3-85 aa
PF02798
GST_N 19-77 aa
PF13417
GST_N_3 19-88 aa
PF13409
GST_N_2 20-82 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792909.1 |
Pfam | PF22441 |
CLIC-like_N | Domain | 3 | 85 | 7.6e-10 | 39.5 | CLIC-like N-terminal domain |
XP_057792909.1 |
Pfam | PF02798 |
GST_N | Domain | 19 | 77 | 7.2e-07 | 30.2 | Glutathione S-transferase, N-terminal domain |
XP_057792909.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 19 | 88 | 1.1e-17 | 64.8 | Glutathione S-transferase, N-terminal domain |
XP_057792909.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 20 | 82 | 2.3e-18 | 67.2 | Glutathione S-transferase, N-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。