当前解析结果
SmilChr01G003188| 统一新 Gene ID | SmilChr01G003188 |
|---|---|
| 名称 | SmilChr01G003188 |
| 描述 | uncharacterized SmilChr01G003188 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 50635509 - 50637872 / + |
| NCBI Gene ID | LOC131009535 |
|---|---|
| GeneID | 131009535 |
| locus_tag | - |
| NCBI Name | LOC131009535 |
| 原始查询 | SmilChr01G003188 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=25.6; qcov=0.733; evalue=7.17e-47; confidence=low |
| Rice | Os06g0704400- identity=29.3; qcov=0.902; evalue=2.46e-72; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009535 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792920.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792920.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792920.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792920.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792920.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:50635576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,C22,C35,C65,D6 |
Chr1:50635596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B129,B28,C71,C86 |
Chr1:50635748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:50635761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B129,B28 |
Chr1:50635812 |
A |
AAG |
2bp_insertion | frameshift_variant | 29 | A19,A22,B106,B110,B120,B129,B130,B21,B36,B58,B74,B82,B89,B90,B92,B95,B97,C26,C28,C31,C33,C36,C52,C53,C71,C80,C84,C85,D5 |
Chr1:50635846 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A22,B12,B123,B134,B16,B59,B6,C1 |
Chr1:50635874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:50635907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr1:50635948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B7 |
Chr1:50635999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,C33 |
Chr1:50636015 |
A |
ATG |
2bp_insertion | frameshift_variant | 13 | A18,B110,B134,B15,B19,B4,B49,B61,B87,B95,C53,C76,C77 |
Chr1:50636019 |
T |
TA |
1bp_insertion | frameshift_variant | 99 | A14,A19,A2,A20,A21,A22,A24,A6,A8,B1,B10,B100,B101,B102,B104,B106,B114,B119,B120,B121,B122,B123,B126,B129,B13,B135,B137,B139,B140,B16,B18,B21,B22,B27,B29,B32,B36,B38,B39,B40,B41,B42,B43,B48,B51,B52,B53,B54,B55,B58,B59,B63,B65,B68,B69,B70,B74,B76,B79,B80,B82,B89,B90,B91,B92,B94,B97,B99,C14,C15,C16,C17,C23,C25,C28,C30,C31,C33,C36,C39,C42,C44,C50,C6,C63,C67,C70,C74,C80,C82,C83,C84,C85,C87,C9,D11,D2,D5,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792920.1PF03108
DBD_Tnp_Mut 215-277 aa
PF10551
MULE 380-471 aa
PF00872
Transposase_mut 403-496 aa
PF04434
SWIM 623-656 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792920.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 215 | 277 | 3.9e-07 | 30.4 | MuDR family transposase |
XP_057792920.1 |
Pfam | PF10551 |
MULE | Domain | 380 | 471 | 1.9e-10 | 41.7 | MULE transposase domain |
XP_057792920.1 |
Pfam | PF00872 |
Transposase_mut | Family | 403 | 496 | 6.4e-06 | 26.0 | Transposase, Mutator family |
XP_057792920.1 |
Pfam | PF04434 |
SWIM | Domain | 623 | 656 | 2e-09 | 37.5 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。