当前解析结果
SmilChr01G003197| 统一新 Gene ID | SmilChr01G003197 |
|---|---|
| 名称 | SmilChr01G003197 |
| 描述 | protein Brevis radix-like 2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 50734261 - 50739017 / - |
| NCBI Gene ID | LOC130990771 |
|---|---|
| GeneID | 130990771 |
| locus_tag | - |
| NCBI Name | LOC130990771 |
| 原始查询 | SmilChr01G003197 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein Brevis radix-like 2 |
| 产物 | protein Brevis radix-like 2 |
| Arabidopsis | AT3G14000 (ATBRXL2)DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820614] identity=66.7; qcov=1.03; evalue=6.74e-168; confidence=high |
| Rice | Os09g0444500 (OsBRXL5)- identity=55.2; qcov=1.15; evalue=6.74e-136; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF08381 (BRX); PF13713 (BRX_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990771 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.40000 | XP_057770989.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057770989.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057770986.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057770986.1 |
| 5 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057770986.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:50734665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B87,C64,C66,C78 |
Chr1:50734667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C13 |
Chr1:50734673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B87,C64,C66,C78 |
Chr1:50734685 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A11,A20,B34,B40,B74,C62,D1,D6 |
Chr1:50734860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr1:50735297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr1:50737756 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B90,B92,C28 |
Chr1:50737756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B90,B92,C28 |
Chr1:50737802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:50737817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,A9,B119,C17,C33 |
Chr1:50737875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B86 |
Chr1:50737883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770986.1PF13713
BRX_N 30-65 aa
PF08381
BRX 142-196 aa
PF08381
BRX 318-348 aa
XP_057770989.1PF13713
BRX_N 30-65 aa
PF08381
BRX 142-196 aa
PF08381
BRX 318-373 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770986.1 |
Pfam | PF13713 |
BRX_N | Domain | 30 | 65 | 4e-17 | 62.3 | Transcription factor BRX N-terminal domain |
XP_057770986.1 |
Pfam | PF08381 |
BRX | Domain | 142 | 196 | 2e-40 | 136.7 | Transcription factor regulating root and shoot growth via Pin3 |
XP_057770986.1 |
Pfam | PF08381 |
BRX | Domain | 318 | 348 | 2e-40 | 136.7 | Transcription factor regulating root and shoot growth via Pin3 |
XP_057770989.1 |
Pfam | PF13713 |
BRX_N | Domain | 30 | 65 | 3.9e-17 | 62.4 | Transcription factor BRX N-terminal domain |
XP_057770989.1 |
Pfam | PF08381 |
BRX | Domain | 142 | 196 | 2.8e-54 | 181.0 | Transcription factor regulating root and shoot growth via Pin3 |
XP_057770989.1 |
Pfam | PF08381 |
BRX | Domain | 318 | 373 | 2.8e-54 | 181.0 | Transcription factor regulating root and shoot growth via Pin3 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。