当前解析结果
SmilChr01G003224| 统一新 Gene ID | SmilChr01G003224 |
|---|---|
| 名称 | SmilChr01G003224 |
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51008419 - 51009645 / + |
| NCBI Gene ID | LOC131009586 |
|---|---|
| GeneID | 131009586 |
| locus_tag | - |
| NCBI Name | LOC131009586 |
| 原始查询 | SmilChr01G003224 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 产物 | putative late blight resistance protein homolog R1B-17 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=33; qcov=0.87; evalue=1.28e-59; confidence=low |
| Rice | Os11g0633500- identity=36.6; qcov=0.87; evalue=1.22e-68; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009586 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057792986.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057792986.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792986.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792986.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792986.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51008447 |
A |
AG |
1bp_insertion | frameshift_variant | 66 | A10,A13,A18,A22,A24,B10,B102,B103,B105,B109,B113,B119,B12,B128,B129,B131,B132,B135,B137,B14,B15,B16,B17,B18,B24,B26,B27,B28,B29,B32,B33,B46,B49,B50,B67,B75,B76,B88,B89,C11,C14,C17,C2,C20,C21,C23,C25,C28,C30,C31,C33,C34,C37,C39,C41,C58,C69,C74,C75,C79,C8,C81,D10,D11,D4,D7 |
Chr1:51008461 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | C41,C81 |
Chr1:51008461 |
AC |
A |
1bp_deletion | CDS_variant | 2 | C41,C81 |
Chr1:51008494 |
T |
TG |
1bp_insertion | frameshift_variant | 17 | A24,A25,B32,B38,B42,B43,B69,C12,C31,C37,C4,C41,C45,C49,C62,C81,C87 |
Chr1:51008498 |
C |
CGA |
2bp_insertion | frameshift_variant | 5 | A16,B2,B51,C17,C41 |
Chr1:51008498 |
C |
CGA |
2bp_insertion | CDS_variant | 5 | A16,B2,B51,C17,C41 |
Chr1:51008516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B2,B51,C41,D10 |
Chr1:51008523 |
T |
TC |
1bp_insertion | frameshift_variant | 4 | A16,B2,B51,C41 |
Chr1:51008523 |
T |
TC |
1bp_insertion | CDS_variant | 4 | A16,B2,B51,C41 |
Chr1:51008526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B2,B51,C41 |
Chr1:51008559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B2,B51,C41,C49 |
Chr1:51008585 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | A25,C30,C37,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792986.1PF00931
NB-ARC 58-212 aa
PF23559
WHD_DRP 297-367 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792986.1 |
Pfam | PF00931 |
NB-ARC | Domain | 58 | 212 | 3.1e-40 | 138.3 | NB-ARC domain |
XP_057792986.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 297 | 367 | 1.4e-16 | 61.0 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。