当前解析结果
SmilChr01G003228| 统一新 Gene ID | SmilChr01G003228 |
|---|---|
| 名称 | SmilChr01G003228 |
| 描述 | aminopeptidase M1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51041920 - 51053928 / + |
| NCBI Gene ID | LOC130991016 |
|---|---|
| GeneID | 130991016 |
| locus_tag | - |
| NCBI Name | LOC130991016 |
| 原始查询 | SmilChr01G003228 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aminopeptidase M1-like |
| 产物 | aminopeptidase M1-like |
| Arabidopsis | AT4G33090 (APM1)aminopeptidase M1 [Source:NCBI gene (formerly Entrezgene);Acc:829446] identity=57.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0218200- identity=53.7; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding); GO:0042277 (peptide binding); GO:0043171 (peptide catabolic process); GO:0070006 (metalloaminopeptidase activity) |
| KEGG | - |
| Pfam | PF01433 (Peptidase_M1); PF11838 (ERAP1_C); PF17900 (Peptidase_M1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991016 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771202.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057771202.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771202.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771202.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771202.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51042815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B59,C38 |
Chr1:51043043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:51043360 |
TG |
T |
1bp_deletion | frameshift_variant | 8 | A15,B26,B4,B85,C16,C20,C31,C36 |
Chr1:51043369 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr1:51043951 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B140,B2,B66 |
Chr1:51044007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B140 |
Chr1:51044010 |
G |
GGT |
2bp_insertion | CDS_variant | 1 | B104 |
Chr1:51049232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr1:51049611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B76,B96,D7 |
Chr1:51049838 |
G |
A |
EMS_canonical_SNV | stop_gained | 15 | A3,A8,B2,B42,B43,B48,B52,B71,B73,B91,C19,C4,C41,C55,D5 |
Chr1:51050327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr1:51050683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771202.1PF17900
Peptidase_M1_N 22-205 aa
PF01433
Peptidase_M1 240-456 aa
PF11838
ERAP1_C 531-850 aa
XP_057771207.1PF17900
Peptidase_M1_N 15-95 aa
PF01433
Peptidase_M1 130-346 aa
PF11838
ERAP1_C 421-740 aa
XP_057771213.1PF17900
Peptidase_M1_N 14-94 aa
PF01433
Peptidase_M1 129-345 aa
PF11838
ERAP1_C 420-739 aa
XP_057771221.1PF17900
Peptidase_M1_N 2-47 aa
PF01433
Peptidase_M1 82-298 aa
PF11838
ERAP1_C 373-692 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771202.1 |
Pfam | PF17900 |
Peptidase_M1_N | Domain | 22 | 205 | 1e-50 | 173.2 | Peptidase M1 N-terminal domain |
XP_057771202.1 |
Pfam | PF01433 |
Peptidase_M1 | Domain | 240 | 456 | 3.7e-81 | 272.6 | Peptidase family M1 domain |
XP_057771202.1 |
Pfam | PF11838 |
ERAP1_C | Domain | 531 | 850 | 3.4e-74 | 250.8 | ERAP1-like C-terminal domain |
XP_057771207.1 |
Pfam | PF17900 |
Peptidase_M1_N | Domain | 15 | 95 | 2.7e-28 | 100.1 | Peptidase M1 N-terminal domain |
XP_057771207.1 |
Pfam | PF01433 |
Peptidase_M1 | Domain | 130 | 346 | 2.9e-81 | 273.0 | Peptidase family M1 domain |
XP_057771207.1 |
Pfam | PF11838 |
ERAP1_C | Domain | 421 | 740 | 1.8e-74 | 251.8 | ERAP1-like C-terminal domain |
XP_057771213.1 |
Pfam | PF17900 |
Peptidase_M1_N | Domain | 14 | 94 | 2.7e-28 | 100.1 | Peptidase M1 N-terminal domain |
XP_057771213.1 |
Pfam | PF01433 |
Peptidase_M1 | Domain | 129 | 345 | 2.9e-81 | 273.0 | Peptidase family M1 domain |
XP_057771213.1 |
Pfam | PF11838 |
ERAP1_C | Domain | 420 | 739 | 1.8e-74 | 251.8 | ERAP1-like C-terminal domain |
XP_057771221.1 |
Pfam | PF17900 |
Peptidase_M1_N | Domain | 2 | 47 | 2e-07 | 32.0 | Peptidase M1 N-terminal domain |
XP_057771221.1 |
Pfam | PF01433 |
Peptidase_M1 | Domain | 82 | 298 | 2.5e-81 | 273.1 | Peptidase family M1 domain |
XP_057771221.1 |
Pfam | PF11838 |
ERAP1_C | Domain | 373 | 692 | 1.6e-74 | 252.0 | ERAP1-like C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。