Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G003232

染色体: Chr01 坐标: 51088112-51092121 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G003232
名称SmilChr01G003232
描述protein phosphatase 2C 16-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向51088112 - 51092121 / -

ID 对照

NCBI Gene IDLOC130991078
GeneID130991078
locus_tag-
NCBI NameLOC130991078
原始查询SmilChr01G003232

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein phosphatase 2C 16-like
产物protein phosphatase 2C 16-like
ArabidopsisAT1G72770 (HAB1)
HYPERSENSITIVE TO ABA1 [Source:NCBI gene (formerly Entrezgene);Acc:843609]
identity=55.5; qcov=1.02; evalue=0; confidence=high
RiceOs01g0583100 (OsPP2C06/OsABI2)
-
identity=66.8; qcov=0.646; evalue=1.15e-165; confidence=high
GOGO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding)
KEGGsmil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
PfamPF00481 (PP2C)
InterPro-
eggNOG-
NRGeneID:130991078

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057771227.1
2 Cytosol 细胞质基质 0.80000 XP_057771227.1
3 Cytoplasm 细胞质 0.20000 XP_057771227.1
4 Chromosome 染色体 0.00000 XP_057771227.1
5 Centromere 着丝粒 0.00000 XP_057771227.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:51088522 G A EMS_canonical_SNV CDS_variant 3 B76,B96,D7
Chr1:51088603 G A EMS_canonical_SNV CDS_variant 3 B65,C87,D8
Chr1:51088624 G A EMS_canonical_SNV CDS_variant 2 B28,D11
Chr1:51089357 G A EMS_canonical_SNV CDS_variant 1 A20
Chr1:51089365 C T EMS_canonical_SNV CDS_variant 1 B80
Chr1:51089372 G A EMS_canonical_SNV CDS_variant 2 B89,D8
Chr1:51089732 G A EMS_canonical_SNV CDS_variant 4 B108,B56,B96,C23
Chr1:51089839 C T EMS_canonical_SNV CDS_variant 1 C22
Chr1:51089840 G A EMS_canonical_SNV CDS_variant 2 B89,D8
Chr1:51090542 C T EMS_canonical_SNV CDS_variant 1 B108
Chr1:51090626 C T EMS_canonical_SNV CDS_variant 4 B56,B76,B96,D7
Chr1:51090844 G A EMS_canonical_SNV CDS_variant 4 B102,B57,B83,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057771227.1
536 aa
N
1
268
536
PP2C
C
PF00481 PP2C 249-519 aa
XP_057771228.1
536 aa
N
1
268
536
PP2C
C
PF00481 PP2C 249-519 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771227.1 Pfam PF00481 PP2C Family 249 519 2.4e-61 208.3 Protein phosphatase 2C
XP_057771228.1 Pfam PF00481 PP2C Family 249 519 2.4e-61 208.3 Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057915244.1
AAGCACAATCCTAAGATGATTATGTTTTTTTCTCTCTTATATTTTTCTGTGTATATTTTTCGTTTCCTTTTTCTGCTCAGAAGCATTGATTGGAGTTAGATAATTGAGTCTACACGTGTCCTGTGAAGCAGTTCTTCAATTTACTAAAAAGCTTTTCCACACACTTCTCTTTCTCTCTCTCTGTCTCCACCCCCTCTCTCTCCTCTCAATCCCTCAAAGCTGAGGTAATTAGCTAAATGATGTAAAACACAAAAAATCTG...
XM_057915245.1
TGGTGAGATTCCTTTCACATCTCTTCTTTACACTTCGATCCCAGTTGAAAAAATTGGTTCTTGGATGTGGTGGCTCAGTCCCTTTTGTTTTGTAATTTGTGGGTTTCTTAGTTTGTGAAGAATTTTTTATCAAAGATTTAATCATGATTGTTGTTGGGGGAAATCGGAGATTTGTTTGATTAATTTATAAAGGAACGCATGTTGTTTGAGAGGCTGAGAATTGTTGCCTTAGATCCATGAAACCCGTATTCCATGTGGCA...

CDS

2 records

下载 CDS FASTA
LOC130991078
ATGGACGGAATGTGTCCAGCAATTGCGGTTACAGTTAGCTTAGGTAGTAGTCCTGCGTGTGAAACTCACAAGGAGACCGCACGGCTCAAGCTGGAGACGGAGGCAGCAATGGTGCTGGATGATAATTCTTGTTCTAGTTTGGATAATGATGTCTCGGTAATGCCGGGAGTAGGTGAGGCGAAACATGATCTGTCACAGACGAGGCGGATAGCTGAAAACGGTCAGTTCGGTAGTGATGTTCAGGAAAGTGAGGAAGACGA...
LOC130991078
ATGGACGGAATGTGTCCAGCAATTGCGGTTACAGTTAGCTTAGGTAGTAGTCCTGCGTGTGAAACTCACAAGGAGACCGCACGGCTCAAGCTGGAGACGGAGGCAGCAATGGTGCTGGATGATAATTCTTGTTCTAGTTTGGATAATGATGTCTCGGTAATGCCGGGAGTAGGTGAGGCGAAACATGATCTGTCACAGACGAGGCGGATAGCTGAAAACGGTCAGTTCGGTAGTGATGTTCAGGAAAGTGAGGAAGACGA...

Protein

2 records

下载 Protein FASTA
XP_057771227.1
MDGMCPAIAVTVSLGSSPACETHKETARLKLETEAAMVLDDNSCSSLDNDVSVMPGVGEAKHDLSQTRRIAENGQFGSDVQESEEDEVLSIGEDPNFSSVELLPLDSSSNLSVPLDTAPESSLPIAVEIEGVDNGQIVAKVISVEERNTKQRLSHDALAVATRQDEECSSGPTIKASVVSLKLSGEKDPSKGGVKSVYELDCLPLWGSVSIIGHRPEMEDAIVAVPHFMKIPIKMFIGDYKIDGISQTLTHLTSHFFGVY...
XP_057771228.1
MDGMCPAIAVTVSLGSSPACETHKETARLKLETEAAMVLDDNSCSSLDNDVSVMPGVGEAKHDLSQTRRIAENGQFGSDVQESEEDEVLSIGEDPNFSSVELLPLDSSSNLSVPLDTAPESSLPIAVEIEGVDNGQIVAKVISVEERNTKQRLSHDALAVATRQDEECSSGPTIKASVVSLKLSGEKDPSKGGVKSVYELDCLPLWGSVSIIGHRPEMEDAIVAVPHFMKIPIKMFIGDYKIDGISQTLTHLTSHFFGVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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