当前解析结果
SmilChr01G003232| 统一新 Gene ID | SmilChr01G003232 |
|---|---|
| 名称 | SmilChr01G003232 |
| 描述 | protein phosphatase 2C 16-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51088112 - 51092121 / - |
| NCBI Gene ID | LOC130991078 |
|---|---|
| GeneID | 130991078 |
| locus_tag | - |
| NCBI Name | LOC130991078 |
| 原始查询 | SmilChr01G003232 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein phosphatase 2C 16-like |
| 产物 | protein phosphatase 2C 16-like |
| Arabidopsis | AT1G72770 (HAB1)HYPERSENSITIVE TO ABA1 [Source:NCBI gene (formerly Entrezgene);Acc:843609] identity=55.5; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0583100 (OsPP2C06/OsABI2)- identity=66.8; qcov=0.646; evalue=1.15e-165; confidence=high |
| GO | GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00481 (PP2C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991078 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771227.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057771227.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057771227.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771227.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771227.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51088522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B76,B96,D7 |
Chr1:51088603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,C87,D8 |
Chr1:51088624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,D11 |
Chr1:51089357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr1:51089365 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr1:51089372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B89,D8 |
Chr1:51089732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B56,B96,C23 |
Chr1:51089839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr1:51089840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B89,D8 |
Chr1:51090542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr1:51090626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B76,B96,D7 |
Chr1:51090844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B57,B83,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771227.1PF00481
PP2C 249-519 aa
XP_057771228.1PF00481
PP2C 249-519 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771227.1 |
Pfam | PF00481 |
PP2C | Family | 249 | 519 | 2.4e-61 | 208.3 | Protein phosphatase 2C |
XP_057771228.1 |
Pfam | PF00481 |
PP2C | Family | 249 | 519 | 2.4e-61 | 208.3 | Protein phosphatase 2C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。