Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003238`

染色体: Chr01 坐标: 51127601-51129991 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003238`
名称	SmilChr01G003238
描述	glycylpeptide N-tetradecanoyltransferase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51127601 - 51129991 / `-`

ID 对照

NCBI Gene ID	`LOC130991199`
GeneID	`130991199`
locus_tag	`-`
NCBI Name	`LOC130991199`
原始查询	`SmilChr01G003238`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycylpeptide N-tetradecanoyltransferase 1-like
产物	glycylpeptide N-tetradecanoyltransferase 1-like
Arabidopsis	`AT5G57020` (NMT1) myristoyl-CoA:protein N-myristoyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:835805] identity=78.6; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0708100` - identity=76.2; qcov=0.956; evalue=0; confidence=high
GO	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity); GO:0005737 (cytoplasm); GO:0018008 (N-terminal peptidyl-glycine N-myristoylation)
KEGG	-
Pfam	PF01233 (NMT); PF02799 (NMT_C)
InterPro	-
eggNOG	-
NR	GeneID:130991199

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771281.1`
2	Nucleus	细胞核	0.20000	`XP_057771281.1`
3	Cytosol	细胞质基质	0.20000	`XP_057771281.1`
4	Chromosome	染色体	0.00000	`XP_057771281.1`
5	Centromere	着丝粒	0.00000	`XP_057771281.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51127807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:51127826`	`A`	`AGT`	2bp_insertion	frameshift_variant	23	A1,A16,A22,A25,B101,B106,B123,B127,B13,B133,B138,B19,B20,B51,B60,B66,B69,B82,B97,C40,C5,C71,C77
`Chr1:51127858`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B56,B76,B96
`Chr1:51127874`	`TC`	`T`	1bp_deletion	frameshift_variant	12	B33,B34,B49,B57,B70,B74,B83,C17,C76,C81,D4,D6
`Chr1:51127876`	`TCC`	`T`	2bp_deletion	frameshift_variant	12	B33,B34,B49,B57,B70,B74,B83,C17,C76,C81,D4,D6
`Chr1:51127945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B16
`Chr1:51128025`	`A`	`AAT`	2bp_insertion	frameshift_variant	21	A11,A4,B101,B104,B114,B122,B123,B127,B140,B25,B37,B79,B90,B92,C26,C42,C48,C53,C60,C71,D6
`Chr1:51128027`	`TAG`	`T`	2bp_deletion	frameshift_variant	21	A11,A4,B101,B104,B114,B122,B123,B127,B140,B25,B37,B79,B90,B92,C26,C42,C48,C53,C60,C71,D6
`Chr1:51128073`	`A`	`AAT`	2bp_insertion	frameshift_variant	212	A1,A10,A11,A13,A14,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B111,B112,B113,B114,B115,B118,B119,B12,B121,B122,B123,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B16,B17,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B35,B36,B37,B40,B41,B44,B45,B46,B47,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B64,B65,B66,B67,B68,B69,B70,B71,B72,B74,B75,B76,B77,B78,B79,B83,B86,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C14,C15,C17,C18,C2,C20,C22,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C40,C42,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:51128075`	`G`	`GCT`	2bp_insertion	frameshift_variant	10	B129,B14,B24,B33,B50,B85,C2,C39,C50,C58
`Chr1:51128076`	`G`	`GA`	1bp_insertion	frameshift_variant	37	A10,A15,A16,A18,A25,A5,B100,B110,B122,B123,B127,B136,B23,B34,B44,B60,B61,B65,B82,B87,B95,B96,C1,C17,C21,C35,C41,C46,C47,C49,C60,C67,C68,C7,C80,D2,D9
`Chr1:51128077`	`G`	`GA`	1bp_insertion	frameshift_variant	216	A1,A10,A11,A13,A14,A15,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B118,B119,B12,B121,B122,B123,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B35,B36,B37,B40,B41,B44,B45,B46,B47,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B64,B65,B66,B67,B68,B69,B70,B71,B72,B74,B75,B76,B77,B78,B79,B83,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C14,C15,C17,C18,C2,C20,C21,C22,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C40,C41,C42,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771281.1

431 aa

216

431

NMT

NMT_C

PF01233 NMT 68-227 aa PF02799 NMT_C 241-420 aa

XP_057771290.1

431 aa

216

431

NMT

NMT_C

PF01233 NMT 68-227 aa PF02799 NMT_C 241-420 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771281.1`	Pfam	`PF01233`	NMT	Domain	68	227	2e-77	259.3	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
`XP_057771281.1`	Pfam	`PF02799`	NMT_C	Domain	241	420	2.7e-81	272.8	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
`XP_057771290.1`	Pfam	`PF01233`	NMT	Domain	68	227	2e-77	259.3	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
`XP_057771290.1`	Pfam	`PF02799`	NMT_C	Domain	241	420	2.7e-81	272.8	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915298.1
AAAATAAAAAAAATCATAGAATTGACGATGCCACGATCCAAAATATCAAAAATGCCCTTGTAATTTAGGGTTAATGGAAGAAAAAGATCTTTCTTTGGTCCAGACATCCCACACATTCCACTGCTTTACCTAAAATCCATGATTCCTTGCTCCCATCTTCTTTGATTCCATCAATCGAGACTCAATTCGACTTCTTTCGAATTTTGGCTACGTAGATCTCCATTAATTGCTGTTGCTGCGCAGCTCGCGATTCGTGGTTG...

XM_057915307.1
TGCCCTTGTAATTTAGGGTTAATGGAAGAAAAAGATCTTTCTTTGGTCCAGACATCCCACACATTCCACTGCTTTACCTAAAATCCATGATTCCTTGCTCCCATCTTCTTTGATTCCATCAATCGAGACTCAATTCGACTTCTTTCGAATTTTGGCTACGTAGATCTCCATTAATTGCTGTTGCTGCGCAGCTCGCGATTCGTGGTTGAGAGTAGGTTTCTTGAGAATGGCTGACAACGATGCTCTAGCTGAAAACGTCC...

CDS

2 records

下载 CDS FASTA

LOC130991199
ATGGCTGACAACGATGCTCTAGCTGAAAACGTCCCCTCTAATGAGAATAATGCACCTTCGGAGAATGAAAGCGAGACGTCAATTGATGCATTAGCAAGAAAGGTTCAAGAGTCGCTCTCGCTTTCAAAGAGGCATAAGTTTTGGGAGACCCAACCCGTAGGCCAGTTCAAGGATCTTGGAGACACGAGTCTGCCTGAAGGCCCGATTGAGCAACCAACGCCACTGTCTGAAGTCAAGCAGGAGCCGTATAATCTCCCAGC...

Protein

2 records

下载 Protein FASTA

XP_057771281.1
MADNDALAENVPSNENNAPSENESETSIDALARKVQESLSLSKRHKFWETQPVGQFKDLGDTSLPEGPIEQPTPLSEVKQEPYNLPAPYEWVTCNLDSEEVCSEVYTLLTNNYVEDDENMFRFNYSKEFLRWALHPPGYFRSWHIGVRVKTSKKLVAFITGIPAKIRVRDAVVLLAEVNFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVVLPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLY...

XP_057771290.1
MADNDALAENVPSNENNAPSENESETSIDALARKVQESLSLSKRHKFWETQPVGQFKDLGDTSLPEGPIEQPTPLSEVKQEPYNLPAPYEWVTCNLDSEEVCSEVYTLLTNNYVEDDENMFRFNYSKEFLRWALHPPGYFRSWHIGVRVKTSKKLVAFITGIPAKIRVRDAVVLLAEVNFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVVLPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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