当前解析结果
SmilChr01G003242| 统一新 Gene ID | SmilChr01G003242 |
|---|---|
| 名称 | SmilChr01G003242 |
| 描述 | probable phospholipid-transporting ATPase 4 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51148716 - 51154561 / - |
| NCBI Gene ID | LOC130991227 |
|---|---|
| GeneID | 130991227 |
| locus_tag | - |
| NCBI Name | LOC130991227 |
| 原始查询 | SmilChr01G003242 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable phospholipid-transporting ATPase 4 |
| 产物 | probable phospholipid-transporting ATPase 4 |
| Arabidopsis | AT1G17500 (AT1G17500)ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838324] identity=73; qcov=0.989; evalue=0; confidence=high |
| Rice | Os06g0565900- identity=77; qcov=0.528; evalue=0; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity) |
| KEGG | - |
| Pfam | PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991227 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771320.1 |
| 2 | Endosome | 内体 | 0.60000 | XP_057771320.1 |
| 3 | Endosome membrane | 内体膜 | 0.60000 | XP_057771320.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057771320.1 |
| 5 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057771320.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51149034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C47,D11 |
Chr1:51149181 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C61,D5 |
Chr1:51149199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:51149259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:51149358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B100 |
Chr1:51149394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B51,D10 |
Chr1:51149482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:51149499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:51149565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,D11 |
Chr1:51149613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,C25 |
Chr1:51149722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B28,B59,C38,C75 |
Chr1:51149780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B131,B2,B66,C10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771320.1PF16209
PhoLip_ATPase_N 44-110 aa
PF13246
Cation_ATPase 535-729 aa
PF16212
PhoLip_ATPase_C 901-1151 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771320.1 |
Pfam | PF16209 |
PhoLip_ATPase_N | Family | 44 | 110 | 2.9e-23 | 82.0 | Phospholipid-translocating ATPase N-terminal |
XP_057771320.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 535 | 729 | 1.5e-19 | 71.2 | P-type ATPase, cytoplasmic domain N |
XP_057771320.1 |
Pfam | PF16212 |
PhoLip_ATPase_C | Family | 901 | 1151 | 2.4e-87 | 293.6 | Phospholipid-translocating P-type ATPase C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。