Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003249`

染色体: Chr01 坐标: 51208392-51212929 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003249`
名称	SmilChr01G003249
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51208392 - 51212929 / `+`

ID 对照

NCBI Gene ID	`LOC130991300`
GeneID	`130991300`
locus_tag	`-`
NCBI Name	`LOC130991300`
原始查询	`SmilChr01G003249`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT1G58390` (AT1G58390) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=28.4; qcov=0.973; evalue=5.73e-69; confidence=low
Rice	`Os07g0186500` - identity=28.6; qcov=0.967; evalue=1.45e-73; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130991300

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057771418.1`
2	Cell membrane	细胞膜	0.40000	`XP_057771418.1`
3	Cytoplasm	细胞质	0.20000	`XP_057771418.1`
4	Nucleus	细胞核	0.00000	`XP_057771418.1`
5	Chromosome	染色体	0.00000	`XP_057771418.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51208737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:51208765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B131,B2,C10
`Chr1:51208779`	`AG`	`A`	1bp_deletion	frameshift_variant	7	A21,A23,B121,B3,B6,C53,C77
`Chr1:51208819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,C39,D10,D11
`Chr1:51208865`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	C13
`Chr1:51208865`	`TCG`	`T`	2bp_deletion	CDS_variant	1	C13
`Chr1:51208958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B131,B2,C10
`Chr1:51208995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B131,B2,C10
`Chr1:51208999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr1:51209099`	`TG`	`T`	1bp_deletion	frameshift_variant	6	B16,B68,B75,B9,C21,C55
`Chr1:51209109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B131,B2,C10
`Chr1:51209228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B62,B74,C45,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771418.1

939 aa

470

939

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 155-330 aa PF23559 WHD_DRP 413-484 aa PF23598 LRR_14 569-854 aa

XP_057771447.1

902 aa

451

902

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 155-330 aa PF23559 WHD_DRP 413-484 aa PF23598 LRR_14 569-853 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771418.1`	Pfam	`PF00931`	NB-ARC	Domain	155	330	3.2e-41	141.5	NB-ARC domain
`XP_057771418.1`	Pfam	`PF23559`	WHD_DRP	Domain	413	484	3.7e-21	75.7	Disease resistance protein Winged helix domain
`XP_057771418.1`	Pfam	`PF23598`	LRR_14	Repeat	569	854	1.1e-14	54.7	Leucine-rich repeat region
`XP_057771447.1`	Pfam	`PF00931`	NB-ARC	Domain	155	330	3e-41	141.6	NB-ARC domain
`XP_057771447.1`	Pfam	`PF23559`	WHD_DRP	Domain	413	484	3.5e-21	75.7	Disease resistance protein Winged helix domain
`XP_057771447.1`	Pfam	`PF23598`	LRR_14	Repeat	569	853	9.2e-15	55.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XR_009091123.1
CAGATTCTAACGAACCTGAAACTTCCAAAAGCTCATCAATTATCGATTACAGTTTCCCTCAAAATCATTCCTTCAAACTCGTCAAATTCAAAACCCCTCTCCCTCACCGCTTCTTCTCTTCATGCTGGCTAGCTCAGCTTAGTGATTGGTGAACTCTTTCGTTTGAATCGGTGGAAAGTGGGACCAAAGCATCTGTACTAGCAGCATCGTGGAGTCTTCTCCACTACTCGTTGAATATCTTAACCTAATCACGATCGAGT...

XR_009091133.1
CAGATTCTAACGAACCTGAAACTTCCAAAAGCTCATCAATTATCGATTACAGTTTCCCTCAAAATCATTCCTTCAAACTCGTCAAATTCAAAACCCCTCTCCCTCACCGCTTCTTCTCTTCATGCTGGCTAGCTCAGCTTAGTGATTGGTGAACTCTTTCGTTTGAATCGGTGGAAAGTGGGACCAAAGCATCTGTACTAGCAGCATCGTGGAGTCTTCTCCACTACTCGTTGAATATCTTAACCTAATCACGATCGAGT...

CDS

2 records

下载 CDS FASTA

LOC130991300
ATGGCAGCTTATGCAGCTCTGATTTCCGTTAAGCATATTCTAGATCAGCTCCAGCTTCATCCCCGCCCTCCTATCTCTCTCCACACTCAACAAGCTCAATCACTCGCTAGAAGCATTTCTTCGTTGCAAAATTTTCTCGAAGATTACAGTCCCCGCGTTGGCAACAACAGCGACGAAGCTGATGAGTTGGAGTGTCGCATCGCTGAAGCAGCTCATGCCGCTGAGGATGTTATCGAGGGGCATATAATCGATCGAATTCT...

Protein

2 records

下载 Protein FASTA

XP_057771418.1
MAAYAALISVKHILDQLQLHPRPPISLHTQQAQSLARSISSLQNFLEDYSPRVGNNSDEADELECRIAEAAHAAEDVIEGHIIDRILAGSGSSSDGEEISCIEFYKNLESVIEDMDLIEKEVMQIKETRGNQGQLRRLSPTPAGIGRDVAMIGVDETLTKLIDILTSGKPDRQTISITGMGGIGKTTLARNIYENQIIEHHFDILAWVTISQEYTSEDILLELVLCVKSSKEMSMESLSEMSEDELGEILYKSLCGMRYL...

XP_057771447.1
MAAYAALISVKHILDQLQLHPRPPISLHTQQAQSLARSISSLQNFLEDYSPRVGNNSDEADELECRIAEAAHAAEDVIEGHIIDRILAGSGSSSDGEEISCIEFYKNLESVIEDMDLIEKEVMQIKETRGNQGQLRRLSPTPAGIGRDVAMIGVDETLTKLIDILTSGKPDRQTISITGMGGIGKTTLARNIYENQIIEHHFDILAWVTISQEYTSEDILLELVLCVKSSKEMSMESLSEMSEDELGEILYKSLCGMRYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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