当前解析结果
SmilChr01G003251| 统一新 Gene ID | SmilChr01G003251 |
|---|---|
| 名称 | SmilChr01G003251 |
| 描述 | uncharacterized SmilChr01G003251 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51223504 - 51227486 / - |
| NCBI Gene ID | LOC130991338 |
|---|---|
| GeneID | 130991338 |
| locus_tag | - |
| NCBI Name | LOC130991338 |
| 原始查询 | SmilChr01G003251 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843619]; symbol=AT1G72880; hit=AT1G72880; species=arabidopsis; confidence=high |
| 产物 | Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843619]; symbol=AT1G72880; hit=AT1G72880; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G72880 (AT1G72880)Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843619] identity=59.1; qcov=1.02; evalue=3.7e-155; confidence=high |
| Rice | Os01g0709400- identity=51.1; qcov=0.989; evalue=7.23e-123; confidence=high |
| GO | GO:0008252 (nucleotidase activity) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00760 (Nicotinate and nicotinamide metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01975 (SurE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991338 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771473.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057771473.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771473.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771473.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771473.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51223983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B131,B2,C10,C17 |
Chr1:51224161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,C62 |
Chr1:51224613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,C62 |
Chr1:51224646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B30,B94,C19,C81 |
Chr1:51224886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr1:51226231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr1:51226264 |
AG |
A |
1bp_deletion | frameshift_variant | 31 | A10,A3,B111,B114,B118,B125,B129,B134,B136,B139,B2,B20,B28,B4,B41,B59,B6,B61,B74,B84,B91,C22,C28,C30,C40,C46,C51,C67,C7,C70,C71 |
Chr1:51226871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr1:51226928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:51226982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771473.1PF01975
SurE 59-251 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771473.1 |
Pfam | PF01975 |
SurE | Domain | 59 | 251 | 2.3e-45 | 155.4 | Survival protein SurE |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。