Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003252`

染色体: Chr01 坐标: 51232989-51236464 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003252`
名称	SmilChr01G003252
描述	uncharacterized SmilChr01G003252
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51232989 - 51236464 / `-`

ID 对照

NCBI Gene ID	`LOC130991343`
GeneID	`130991343`
locus_tag	`-`
NCBI Name	`LOC130991343`
原始查询	`SmilChr01G003252`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838341]; symbol=AT1G17640; hit=AT1G17640; species=arabidopsis; confidence=low
产物	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838341]; symbol=AT1G17640; hit=AT1G17640; species=arabidopsis; confidence=low
Arabidopsis	`AT1G17640` (AT1G17640) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838341] identity=66.3; qcov=0.425; evalue=2.47e-82; confidence=low
Rice	`Os08g0492100` - identity=47.4; qcov=0.544; evalue=3.74e-64; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005654 (nucleoplasm); GO:0010468 (regulation of gene expression)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1); PF16367 (RRM_7)
InterPro	-
eggNOG	-
NR	GeneID:130991343

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771486.1`
2	Cytoplasm	细胞质	1.00000	`XP_057771486.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057771486.1`
4	Chromosome	染色体	0.00000	`XP_057771486.1`
5	Centromere	着丝粒	0.00000	`XP_057771486.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51233471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:51233480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B131,B2,C10,C2
`Chr1:51233525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,B66,B92,C48
`Chr1:51233807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,C70,C85,C87
`Chr1:51236032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B76,B96,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771486.1

419 aa

210

419

RRM_1

RRM_7

RRM_1

PF00076 RRM_1 54-119 aa PF16367 RRM_7 142-205 aa PF00076 RRM_1 144-212 aa

XP_057771496.1

419 aa

210

419

RRM_1

RRM_7

RRM_1

PF00076 RRM_1 54-119 aa PF16367 RRM_7 142-205 aa PF00076 RRM_1 144-212 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771486.1`	Pfam	`PF00076`	RRM_1	Domain	54	119	2.8e-35	120.7	RNA recognition motif
`XP_057771486.1`	Pfam	`PF16367`	RRM_7	Domain	142	205	3.8e-13	49.9	RNA recognition motif
`XP_057771486.1`	Pfam	`PF00076`	RRM_1	Domain	144	212	2.8e-35	120.7	RNA recognition motif
`XP_057771496.1`	Pfam	`PF00076`	RRM_1	Domain	54	119	2.8e-35	120.7	RNA recognition motif
`XP_057771496.1`	Pfam	`PF16367`	RRM_7	Domain	142	205	3.8e-13	49.9	RNA recognition motif
`XP_057771496.1`	Pfam	`PF00076`	RRM_1	Domain	144	212	2.8e-35	120.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915503.1
TCGAAAACTAAAAAATATTTCCCTGTAAAATCAGGACGGGAAAAAATTGAATTCCGTCGAAAGAAGAGAAAGGGAGCAGCTAGGGTTTCAACACCCCCAAATTTCTCGAAAACGACACCGCAGCGGGGAGCTCTCCTCCACCTCCATCGTCACCAGCTTCAACAAATAGTGAATTTCTAGCTAGCTATCGAGTTAGGTAGGAAATAGAACAGAATGGATTATGGTGTGCCTGACCAAAACGTCGCCGTTTACGGCGAAGA...

XM_057915513.1
TCGAAAACTAAAAAATATTTCCCTGTAAAATCAGGACGGGAAAAAATTGAATTCCGTCGAAAGAAGAGAAAGGGAGCAGCTAGGGTTTCAACACCCCCAAATTTCTCGAAAACGACACCGCAGCGGGGAGCTCTCCTCCACCTCCATCGTCACCAGCTTCAACAAATAGTGAATTTCTAGCTAGCTATCGAGTTAGGTAATTTGTTCAGGTCTTTGTTTAGGGTTCCCCTGAAAAAATGGGGGCAACTGTAAAAAGGAGT...

CDS

2 records

下载 CDS FASTA

LOC130991343
ATGGATTATGGTGTGCCTGACCAAAACGTCGCCGTTTACGGCGAAGATGAACCGCAGTATGAAGGGCATTACGACGCAGAAGAGGGGAACTACGGTTCAATTGATAACATAGATGATAGTGCAGGCATAAAGCATGATTCTTCGTCGTCTGCAGGAAAACTTTTCGTCGGCGGCATTGCTTGGGAGACTTCTGAAGATTCCTTCAACAGGTATTTTAGCAAGTATGGGGAAATTACAGATTCTGTGATAATGTTGGACAA...

Protein

2 records

下载 Protein FASTA

XP_057771486.1
MDYGVPDQNVAVYGEDEPQYEGHYDAEEGNYGSIDNIDDSAGIKHDSSSSAGKLFVGGIAWETSEDSFNRYFSKYGEITDSVIMLDKISGRPRGFGFVTFADPEVADKVLQEEHIIDGRAVEVKRTVPREDMQGRGGVSKTRKIFVGGLPLSLSEDDLRDYFSSYGNIVEHQIMLDHKTNRSRGFGFVTFESEDAVEKIFSDGRMHELGGKQVEIKKAEPKRSGFDNSNEGRFRRGSSSSRSSGNFAGGSEGFGGGYGGK...

XP_057771496.1
MDYGVPDQNVAVYGEDEPQYEGHYDAEEGNYGSIDNIDDSAGIKHDSSSSAGKLFVGGIAWETSEDSFNRYFSKYGEITDSVIMLDKISGRPRGFGFVTFADPEVADKVLQEEHIIDGRAVEVKRTVPREDMQGRGGVSKTRKIFVGGLPLSLSEDDLRDYFSSYGNIVEHQIMLDHKTNRSRGFGFVTFESEDAVEKIFSDGRMHELGGKQVEIKKAEPKRSGFDNSNEGRFRRGSSSSRSSGNFAGGSEGFGGGYGGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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