当前解析结果
SmilChr01G003268| 统一新 Gene ID | SmilChr01G003268 |
|---|---|
| 名称 | SmilChr01G003268 |
| 描述 | receptor-like serine/threonine-protein kinase ALE2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51363073 - 51369146 / + |
| NCBI Gene ID | LOC130991442 |
|---|---|
| GeneID | 130991442 |
| locus_tag | - |
| NCBI Name | LOC130991442 |
| 原始查询 | SmilChr01G003268 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like serine/threonine-protein kinase ALE2 |
| 产物 | receptor-like serine/threonine-protein kinase ALE2 |
| Arabidopsis | AT5G56890 (AT5G56890)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835791] identity=57.9; qcov=0.861; evalue=0; confidence=high |
| Rice | Os01g0709500 (P0456F08.11-1)- identity=59.1; qcov=0.837; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF23180 (ALE2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991442 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771661.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057771661.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771661.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771661.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771661.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51364639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:51365263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:51365355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B55,B68,B98,C42 |
Chr1:51365748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:51366786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:51366861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,B28,C38,C75 |
Chr1:51366879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,C28,C31 |
Chr1:51367050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:51367237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:51367314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,D5 |
Chr1:51367353 |
GC |
G |
1bp_deletion | frameshift_variant | 24 | A2,A8,B114,B124,B127,B13,B32,B46,B53,B56,B66,B94,B95,B96,B98,C11,C54,C67,C80,C81,C87,D2,D4,D6 |
Chr1:51367357 |
G |
GGA |
2bp_insertion | frameshift_variant | 26 | A2,A8,B114,B124,B127,B13,B136,B32,B46,B53,B56,B66,B94,B95,B96,B98,C11,C20,C54,C67,C80,C81,C87,D2,D4,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771661.1PF23180
ALE2_N 150-269 aa
PF00069
Pkinase 403-610 aa
PF07714
PK_Tyr_Ser-Thr 403-673 aa
XP_057771667.1PF23180
ALE2_N 149-268 aa
PF00069
Pkinase 402-609 aa
PF07714
PK_Tyr_Ser-Thr 402-672 aa
XP_057771675.1PF23180
ALE2_N 148-267 aa
PF00069
Pkinase 401-608 aa
PF07714
PK_Tyr_Ser-Thr 401-671 aa
XP_057771681.1PF23180
ALE2_N 147-266 aa
PF00069
Pkinase 400-607 aa
PF07714
PK_Tyr_Ser-Thr 400-670 aa
XP_057771688.1PF23180
ALE2_N 133-252 aa
PF00069
Pkinase 386-593 aa
PF07714
PK_Tyr_Ser-Thr 386-656 aa
XP_057771697.1PF23180
ALE2_N 132-251 aa
PF00069
Pkinase 385-592 aa
PF07714
PK_Tyr_Ser-Thr 385-655 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771661.1 |
Pfam | PF23180 |
ALE2_N | Domain | 150 | 269 | 2.4e-48 | 163.9 | Receptor-like PK ALE2 N-terminal domain |
XP_057771661.1 |
Pfam | PF00069 |
Pkinase | Domain | 403 | 610 | 7.1e-44 | 150.9 | Protein kinase domain |
XP_057771661.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 403 | 673 | 1.4e-47 | 162.9 | Protein tyrosine and serine/threonine kinase |
XP_057771667.1 |
Pfam | PF23180 |
ALE2_N | Domain | 149 | 268 | 2.4e-48 | 163.9 | Receptor-like PK ALE2 N-terminal domain |
XP_057771667.1 |
Pfam | PF00069 |
Pkinase | Domain | 402 | 609 | 7.1e-44 | 150.9 | Protein kinase domain |
XP_057771667.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 402 | 672 | 1.4e-47 | 162.9 | Protein tyrosine and serine/threonine kinase |
XP_057771675.1 |
Pfam | PF23180 |
ALE2_N | Domain | 148 | 267 | 2.4e-48 | 163.9 | Receptor-like PK ALE2 N-terminal domain |
XP_057771675.1 |
Pfam | PF00069 |
Pkinase | Domain | 401 | 608 | 7.1e-44 | 150.9 | Protein kinase domain |
XP_057771675.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 401 | 671 | 1.4e-47 | 162.9 | Protein tyrosine and serine/threonine kinase |
XP_057771681.1 |
Pfam | PF23180 |
ALE2_N | Domain | 147 | 266 | 2.4e-48 | 163.9 | Receptor-like PK ALE2 N-terminal domain |
XP_057771681.1 |
Pfam | PF00069 |
Pkinase | Domain | 400 | 607 | 7.1e-44 | 150.9 | Protein kinase domain |
XP_057771681.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 400 | 670 | 1.4e-47 | 162.9 | Protein tyrosine and serine/threonine kinase |
XP_057771688.1 |
Pfam | PF23180 |
ALE2_N | Domain | 133 | 252 | 2.3e-48 | 164.0 | Receptor-like PK ALE2 N-terminal domain |
XP_057771688.1 |
Pfam | PF00069 |
Pkinase | Domain | 386 | 593 | 6.8e-44 | 150.9 | Protein kinase domain |
XP_057771688.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 386 | 656 | 1.4e-47 | 163.0 | Protein tyrosine and serine/threonine kinase |
XP_057771697.1 |
Pfam | PF23180 |
ALE2_N | Domain | 132 | 251 | 2.3e-48 | 164.0 | Receptor-like PK ALE2 N-terminal domain |
XP_057771697.1 |
Pfam | PF00069 |
Pkinase | Domain | 385 | 592 | 6.8e-44 | 150.9 | Protein kinase domain |
XP_057771697.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 385 | 655 | 1.3e-47 | 163.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。