当前解析结果
SmilChr01G003273| 统一新 Gene ID | SmilChr01G003273 |
|---|---|
| 名称 | SmilChr01G003273 |
| 描述 | beta-galactosidase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51433922 - 51439908 / - |
| NCBI Gene ID | LOC130991515 |
|---|---|
| GeneID | 130991515 |
| locus_tag | - |
| NCBI Name | LOC130991515 |
| 原始查询 | SmilChr01G003273 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase-like |
| 产物 | beta-galactosidase-like |
| Arabidopsis | AT3G13750 (BGAL1)beta galactosidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:820584] identity=78.7; qcov=0.99; evalue=0; confidence=high |
| Rice | Os01g0580200 (OsBgal3)- identity=71.6; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991515 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057771762.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057771762.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771762.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771762.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771762.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51434352 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B46 |
Chr1:51434374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,C85,C87 |
Chr1:51434608 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C54 |
Chr1:51434608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr1:51434636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr1:51434640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:51434727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:51434878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B36 |
Chr1:51435071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:51435108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr1:51435917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr1:51435998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771762.1PF01301
Glyco_hydro_35 32-335 aa
PF02449
Glyco_hydro_42 52-184 aa
PF17834
GHD 358-414 aa
PF21467
BetaGal_gal-bd 465-525 aa
PF21467
BetaGal_gal-bd 614-700 aa
PF02140
SUEL_Lectin 757-834 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771762.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 32 | 335 | 7.7e-120 | 401.0 | Glycosyl hydrolases family 35 |
XP_057771762.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 52 | 184 | 2.1e-07 | 31.4 | Beta-galactosidase |
XP_057771762.1 |
Pfam | PF17834 |
GHD | Domain | 358 | 414 | 1e-22 | 80.3 | Beta-sandwich domain in beta galactosidase |
XP_057771762.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 465 | 525 | 2.7e-37 | 127.5 | Beta-galactosidase, galactose-binding domain |
XP_057771762.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 614 | 700 | 2.7e-37 | 127.5 | Beta-galactosidase, galactose-binding domain |
XP_057771762.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 757 | 834 | 1.4e-21 | 77.4 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。