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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G003289

染色体: Chr01 坐标: 51592701-51596225 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G003289
名称SmilChr01G003289
描述pentatricopeptide repeat-containing protein At1g10270-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向51592701 - 51596225 / +

ID 对照

NCBI Gene IDLOC130991701
GeneID130991701
locus_tag-
NCBI NameLOC130991701
原始查询SmilChr01G003289

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g10270-like
产物pentatricopeptide repeat-containing protein At1g10270-like
ArabidopsisAT1G10270 (GRP23)
glutamine-rich protein 23 [Source:NCBI gene (formerly Entrezgene);Acc:837566]
identity=53.5; qcov=0.86; evalue=0; confidence=high
RiceOs05g0365500 (OSJNBb0111K12.9)
-
identity=50.3; qcov=0.826; evalue=2.04e-163; confidence=high
GOGO:0005515 (protein binding); GO:0009507 (chloroplast)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130991701

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057772044.1
2 Nucleus 细胞核 0.00000 XP_057772044.1
3 Chromosome 染色体 0.00000 XP_057772044.1
4 Centromere 着丝粒 0.00000 XP_057772044.1
5 Chromatin 染色质 0.00000 XP_057772044.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:51593085 C T EMS_canonical_SNV CDS_variant 4 B44,C64,C66,C82
Chr1:51593201 C T EMS_canonical_SNV CDS_variant 1 B49
Chr1:51593222 C T EMS_canonical_SNV CDS_variant 2 B13,B137
Chr1:51593256 G A EMS_canonical_SNV CDS_variant 2 A18,B103
Chr1:51593291 C T EMS_canonical_SNV CDS_variant 3 B109,C8,D4
Chr1:51593757 G A EMS_canonical_SNV CDS_variant 1 B26
Chr1:51593816 G A EMS_canonical_SNV CDS_variant 1 C48
Chr1:51593903 G A EMS_canonical_SNV CDS_variant 4 B44,C64,C66,C82
Chr1:51594305 G A EMS_canonical_SNV CDS_variant 5 B113,B124,C40,C65,C67
Chr1:51594481 G A EMS_canonical_SNV CDS_variant 1 B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772044.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772053.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772060.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772067.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772075.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772083.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772092.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772100.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
XP_057772108.1
643 aa
N
1
322
643
PPR_3
PPR
TPR_24
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
C
PF13812 PPR_3 144-193 aa PF01535 PPR 187-213 aa PF23276 TPR_24 188-281 aa PF01535 PPR 223-252 aa PF01535 PPR 259-286 aa PF01535 PPR 330-355 aa PF01535 PPR 372-392 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-435 aa PF01535 PPR 443-472 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772044.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772044.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772044.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772044.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772044.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772044.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772044.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772044.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772044.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772044.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772053.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772053.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772053.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772053.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772053.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772053.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772053.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772053.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772053.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772053.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772060.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772060.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772060.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772060.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772060.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772060.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772060.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772060.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772060.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772060.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772067.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772067.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772067.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772067.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772067.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772067.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772067.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772067.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772067.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772067.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772075.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772075.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772075.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772075.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772075.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772075.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772075.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772075.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772075.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772075.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772083.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772083.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772083.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772083.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772083.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772083.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772083.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772083.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772083.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772083.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772092.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772092.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772092.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772092.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772092.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772092.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772092.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772092.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772092.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772092.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772100.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772100.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772100.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772100.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772100.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772100.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772100.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772100.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772100.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772100.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat
XP_057772108.1 Pfam PF13812 PPR_3 Repeat 144 193 1.2e-15 58.0 Pentatricopeptide repeat domain
XP_057772108.1 Pfam PF01535 PPR Repeat 187 213 1.9e-34 116.2 PPR repeat
XP_057772108.1 Pfam PF23276 TPR_24 Repeat 188 281 6.1e-15 56.0 Pentatricopeptide repeat-containing protein
XP_057772108.1 Pfam PF01535 PPR Repeat 223 252 1.9e-34 116.2 PPR repeat
XP_057772108.1 Pfam PF01535 PPR Repeat 259 286 1.9e-34 116.2 PPR repeat
XP_057772108.1 Pfam PF01535 PPR Repeat 330 355 1.9e-34 116.2 PPR repeat
XP_057772108.1 Pfam PF01535 PPR Repeat 372 392 1.9e-34 116.2 PPR repeat
XP_057772108.1 Pfam PF13041 PPR_2 Repeat 405 452 2.1e-47 159.7 PPR repeat family
XP_057772108.1 Pfam PF01535 PPR Repeat 409 435 1.9e-34 116.2 PPR repeat
XP_057772108.1 Pfam PF01535 PPR Repeat 443 472 1.9e-34 116.2 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057916117.1
ACTTTAACCGCAGAGGGAAAACTCAAAGGAAGGGAAATGAGACGATCACAGTGTCTCTAAAACCCTCATTTCTCCTCCACTTAGGGTTTATACACTCTCTCCACCGCCATGAGCCTCCTCCGCCTCTTTCTCCGCGGCTCCGTCCGCCGGTATTCCTCCAATCATTCCCCCCTGCCCAATATTACCCCAAATCAGCTCTCCTCGGCCGCCGACCACTCCCAGCCCCAATCACCGACAAATTCCCCATCTACCCCCTACAT...
XM_057916092.1
ACTTTAACCGCAGAGGGAAAACTCAAAGGAAGGGAAATGAGACGATCACAGTGTCTCTAAAACCCTCATTTCTCCTCCACTTAGGGTTTATACACTCTCTCCACCGCCATGAGCCTCCTCCGCCTCTTTCTCCGCGGCTCCGTCCGCCGGTATTCCTCCAATCATTCCCCCCTGCCCAATATTACCCCAAATCAGCTCTCCTCGGCCGCCGACCACTCCCAGCCCCAATCACCGACAAATTCCCCATCTACCCCCTACAT...

CDS

9 records

下载 CDS FASTA
LOC130991701
ATGAGCCTCCTCCGCCTCTTTCTCCGCGGCTCCGTCCGCCGGTATTCCTCCAATCATTCCCCCCTGCCCAATATTACCCCAAATCAGCTCTCCTCGGCCGCCGACCACTCCCAGCCCCAATCACCGACAAATTCCCCATCTACCCCCTACATCTCGCAACGCTCCTATGGATTCTCCTCCGCAGAGGAAGCCGCCGCCGAGCGCCGCCGCCGCAAGCGCAGACTCCGGATCGAGCCTCCTCTTTACGCCCTCCGCCCCAA...
LOC130991701
ATGAGCCTCCTCCGCCTCTTTCTCCGCGGCTCCGTCCGCCGGTATTCCTCCAATCATTCCCCCCTGCCCAATATTACCCCAAATCAGCTCTCCTCGGCCGCCGACCACTCCCAGCCCCAATCACCGACAAATTCCCCATCTACCCCCTACATCTCGCAACGCTCCTATGGATTCTCCTCCGCAGAGGAAGCCGCCGCCGAGCGCCGCCGCCGCAAGCGCAGACTCCGGATCGAGCCTCCTCTTTACGCCCTCCGCCCCAA...

Protein

9 records

下载 Protein FASTA
XP_057772044.1
MSLLRLFLRGSVRRYSSNHSPLPNITPNQLSSAADHSQPQSPTNSPSTPYISQRSYGFSSAEEAAAERRRRKRRLRIEPPLYALRPNPQTPPPGAANSADRARLPDSTSVLVGPRLNLHNRVQSLIRAGDIDTASYVCRQSVFQRVRPTVFTCNAVVAAMYRAERYDDAKALFHYFFRQSSIVPNIVSYNNLIVSHCASKDIEAALEVYKEILDTAPFCPSPVTYRHLTKGLMDAGRVDEAVAYLREMLHKGHGADSLVY...
XP_057772053.1
MSLLRLFLRGSVRRYSSNHSPLPNITPNQLSSAADHSQPQSPTNSPSTPYISQRSYGFSSAEEAAAERRRRKRRLRIEPPLYALRPNPQTPPPGAANSADRARLPDSTSVLVGPRLNLHNRVQSLIRAGDIDTASYVCRQSVFQRVRPTVFTCNAVVAAMYRAERYDDAKALFHYFFRQSSIVPNIVSYNNLIVSHCASKDIEAALEVYKEILDTAPFCPSPVTYRHLTKGLMDAGRVDEAVAYLREMLHKGHGADSLVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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