当前解析结果
SmilChr01G003305| 统一新 Gene ID | SmilChr01G003305 |
|---|---|
| 名称 | SmilChr01G003305 |
| 描述 | ubiquitin carboxyl-terminal hydrolase 6-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51733164 - 51739941 / - |
| NCBI Gene ID | LOC130991842 |
|---|---|
| GeneID | 130991842 |
| locus_tag | - |
| NCBI Name | LOC130991842 |
| 原始查询 | SmilChr01G003305 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin carboxyl-terminal hydrolase 6-like |
| 产物 | ubiquitin carboxyl-terminal hydrolase 6-like |
| Arabidopsis | AT1G51710 (UBP6)ubiquitin-specific protease 6 [Source:NCBI gene (formerly Entrezgene);Acc:841596] identity=74.3; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0550100- identity=72.6; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0004843 (cysteine-type deubiquitinase activity); GO:0005515 (protein binding); GO:0016579 (protein deubiquitination); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0061136 (regulation of proteasomal protein catabolic process); GO:0070628 (proteasome binding) |
| KEGG | - |
| Pfam | PF00240 (ubiquitin); PF00443 (UCH); PF13423 (UCH_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991842 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772242.1 |
| 2 | Nucleoplasm | 核质 | 0.80000 | XP_057772242.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057772242.1 |
| 4 | Cytosol | 细胞质基质 | 0.80000 | XP_057772242.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772242.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51733364 |
T |
TAC |
2bp_insertion | frameshift_variant | 17 | A14,A5,B108,B119,B130,B140,B21,B27,B31,B41,B52,B56,B71,C17,C75,C87,D9 |
Chr1:51734046 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | B26 |
Chr1:51736958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C26 |
Chr1:51738095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:51738492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr1:51738513 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr1:51738553 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C82 |
Chr1:51738558 |
TG |
T |
1bp_deletion | frameshift_variant | 30 | A6,B1,B107,B109,B11,B111,B113,B124,B128,B138,B15,B26,B3,B30,B32,B36,B37,B4,B54,B7,B94,B95,C16,C30,C48,C51,C7,C71,C75,C76 |
Chr1:51738668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,C67 |
Chr1:51738882 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | A14,A20,A5,B136,B15,B26,B84 |
Chr1:51738941 |
T |
TC |
1bp_insertion | frameshift_variant | 5 | A1,A4,B95,C33,C85 |
Chr1:51738941 |
T |
TC |
1bp_insertion | CDS_variant | 5 | A1,A4,B95,C33,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772242.1PF00240
ubiquitin 6-73 aa
PF13423
UCH_1 104-447 aa
PF00443
UCH 104-475 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772242.1 |
Pfam | PF00240 |
ubiquitin | Domain | 6 | 73 | 2e-09 | 37.8 | Ubiquitin family |
XP_057772242.1 |
Pfam | PF13423 |
UCH_1 | Domain | 104 | 447 | 5.1e-13 | 50.1 | Ubiquitin carboxyl-terminal hydrolase |
XP_057772242.1 |
Pfam | PF00443 |
UCH | Family | 104 | 475 | 2.7e-57 | 195.0 | Ubiquitin carboxyl-terminal hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。