Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003306`

染色体: Chr01 坐标: 51744962-51753039 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003306`
名称	SmilChr01G003306
描述	uncharacterized SmilChr01G003306
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51744962 - 51753039 / `+`

ID 对照

NCBI Gene ID	`LOC131009701`
GeneID	`131009701`
locus_tag	`-`
NCBI Name	`LOC131009701`
原始查询	`SmilChr01G003306`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dentin sialophosphoprotein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821683]; symbol=AT3G21290; hit=AT3G21290; species=arabidopsis; confidence=low
产物	dentin sialophosphoprotein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821683]; symbol=AT3G21290; hit=AT3G21290; species=arabidopsis; confidence=low
Arabidopsis	`AT3G21290` (AT3G21290) dentin sialophosphoprotein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821683] identity=33.6; qcov=0.826; evalue=1.27e-84; confidence=low
Rice	`Os03g0187100` - identity=48.9; qcov=0.113; evalue=3.41e-32; confidence=weak
GO	-
KEGG	-
Pfam	PF07303 (Occludin_ELL)
InterPro	-
eggNOG	-
NR	GeneID:131009701

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793097.1`
2	Chromosome	染色体	0.00000	`XP_057793097.1`
3	Centromere	着丝粒	0.00000	`XP_057793097.1`
4	Chromatin	染色质	0.00000	`XP_057793097.1`
5	Telomere	端粒	0.00000	`XP_057793097.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51745218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr1:51745221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr1:51745335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr1:51745433`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C44
`Chr1:51745433`	`TG`	`T`	1bp_deletion	CDS_variant	1	C44
`Chr1:51745443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:51746900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C71
`Chr1:51746910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:51748740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C26
`Chr1:51749211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr1:51749565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B13,B131,B137
`Chr1:51750501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793097.1

1162 aa

581

1162

Occludin_ELL

PF07303 Occludin_ELL 1060-1156 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793097.1`	Pfam	`PF07303`	Occludin_ELL	Domain	1060	1156	5.2e-18	66.4	Occludin homology domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937114.1
GGAAAGAGATGAAAAATAGAGAAAACCGGTGGATAATTAGAAAAAAACTGCAAAAAACCCAAATTCAACCATTGTTGGTCGGCTCTTCGCCGAGTTCCATTTGCCTTGTTGAACACTGGTGAAAAATTTTTCACTCTTTCCAAATCCGCCGCGATTAAATCTCTCTAACGCCGCAGAAATCGAGCGGCAGCCTCGAACCGGACCCGGAACCGGTACCAATGTATGGAGCATCCGGAAAGATGGGCCGCGGCGGCGGCGGC...

CDS

1 records

下载 CDS FASTA

LOC131009701
ATGTATGGAGCATCCGGAAAGATGGGCCGCGGCGGCGGCGGCGGAAGCGGCGGCAAAAGAAACATTCACGCGCCGCCAATTGGCCGCCCTACCCCCGCCAGCCGTCTGTCCATGGGCGGCGCTCCTCGCGGCCGCGGCGGGCCGCCGGCATCATCCCCGTCGACCTCCTCGCTGCAGGTGGAGGAGAGCTTCAGCCTTGTTAGGGAGAACCCTTTGAATTTCGGGATGGCCATAAAGCTGACGGCTGACCTCGTGGAGGA...

Protein

1 records

下载 Protein FASTA

XP_057793097.1
MYGASGKMGRGGGGGSGGKRNIHAPPIGRPTPASRLSMGGAPRGRGGPPASSPSTSSLQVEESFSLVRENPLNFGMAIKLTADLVEEIKRLEAQGAAARIKFGANASGNVIHVGDKTIKFTWSREPGDLCDIYEERQSGDGGHGLLVESGGTWRKLNVERELDESTKNHVKRRSEEAERKMKSRKAIVLDHQNPAMKNQMKAFAASESTQWRSFKNRKEPPFKKPKSEPTSAVGPPKSVFKSGPSLPITSLSKGRLSSGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器