当前解析结果
SmilChr01G003316| 统一新 Gene ID | SmilChr01G003316 |
|---|---|
| 名称 | SmilChr01G003316 |
| 描述 | uncharacterized SmilChr01G003316 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51880672 - 51884555 / - |
| NCBI Gene ID | LOC130991938 |
|---|---|
| GeneID | 130991938 |
| locus_tag | - |
| NCBI Name | LOC130991938 |
| 原始查询 | SmilChr01G003316 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821684]; symbol=AT3G21300; hit=AT3G21300; species=arabidopsis; confidence=high |
| 产物 | RNA methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821684]; symbol=AT3G21300; hit=AT3G21300; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G21300 (AT3G21300)RNA methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821684] identity=69.7; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0193600- identity=67.4; qcov=0.905; evalue=0; confidence=high |
| GO | GO:0006396 (RNA processing); GO:0030696 (GO:0030696) |
| KEGG | - |
| Pfam | PF05175 (MTS); PF05958 (tRNA_U5-meth_tr); PF09445 (Methyltransf_15); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991938 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057772380.1 |
| 2 | Chloroplast | 叶绿体 | 1.00000 | XP_057772380.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772380.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772380.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772380.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51880920 |
G |
GAT |
2bp_insertion | frameshift_variant | 1 | B93 |
Chr1:51880920 |
G |
GAT |
2bp_insertion | CDS_variant | 1 | B93 |
Chr1:51880931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,B62 |
Chr1:51881653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C61 |
Chr1:51881838 |
G |
GC |
1bp_insertion | frameshift_variant | 28 | A20,A4,B105,B109,B138,B140,B15,B25,B42,B44,B52,B60,B70,B85,B86,B93,C17,C24,C40,C41,C46,C47,C50,C71,C74,C81,C82,C86 |
Chr1:51882402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C61,C78 |
Chr1:51882818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr1:51882851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C61,C78 |
Chr1:51882863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C61,C78 |
Chr1:51883302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B106 |
Chr1:51883428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,C61,C78 |
Chr1:51883681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,C61,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772380.1PF05958
tRNA_U5-meth_tr 365-554 aa
PF05175
MTS 398-459 aa
PF13847
Methyltransf_31 403-464 aa
PF09445
Methyltransf_15 403-482 aa
PF13649
Methyltransf_25 405-461 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772380.1 |
Pfam | PF05958 |
tRNA_U5-meth_tr | Family | 365 | 554 | 2.3e-17 | 63.8 | tRNA (Uracil-5-)-methyltransferase |
XP_057772380.1 |
Pfam | PF05175 |
MTS | Domain | 398 | 459 | 4.2e-06 | 27.2 | Methyltransferase small domain |
XP_057772380.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 403 | 464 | 1.1e-12 | 48.7 | Methyltransferase domain |
XP_057772380.1 |
Pfam | PF09445 |
Methyltransf_15 | Family | 403 | 482 | 1.2e-05 | 25.7 | RNA cap guanine-N2 methyltransferase |
XP_057772380.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 405 | 461 | 3.8e-08 | 34.6 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。