当前解析结果
SmilChr01G003326| 统一新 Gene ID | SmilChr01G003326 |
|---|---|
| 名称 | SmilChr01G003326 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51939652 - 51942423 / + |
| NCBI Gene ID | LOC131009726 |
|---|---|
| GeneID | 131009726 |
| locus_tag | - |
| NCBI Name | LOC131009726 |
| 原始查询 | SmilChr01G003326 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT1G59780 (AT1G59780)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=24.7; qcov=0.956; evalue=4.35e-58; confidence=weak |
| Rice | Os07g0186500- identity=30.1; qcov=0.777; evalue=5.39e-76; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009726 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057793120.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057793120.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793120.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793120.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793120.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51939756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr1:51939781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C46 |
Chr1:51939823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:51939869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr1:51939907 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B104 |
Chr1:51939907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:51940267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B39,C71,C72,C8 |
Chr1:51940279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:51940473 |
T |
TG |
1bp_insertion | frameshift_variant | 40 | A13,A15,A18,A2,A21,A3,B103,B113,B115,B119,B13,B131,B139,B18,B41,B49,B51,B61,B63,B72,B73,B81,B82,B85,B96,B97,C12,C15,C18,C34,C46,C47,C48,C6,C65,C66,C74,D1,D3,D9 |
Chr1:51940479 |
GA |
G |
1bp_deletion | frameshift_variant | 42 | A13,A15,A18,A2,A21,A3,B103,B113,B115,B119,B13,B131,B139,B18,B41,B49,B51,B61,B63,B72,B73,B81,B82,B85,B86,B96,B97,C12,C15,C18,C34,C46,C47,C48,C6,C65,C66,C72,C74,D1,D3,D9 |
Chr1:51940530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:51940616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793120.1PF00931
NB-ARC 199-361 aa
PF23559
WHD_DRP 448-519 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793120.1 |
Pfam | PF00931 |
NB-ARC | Domain | 199 | 361 | 2.9e-40 | 138.4 | NB-ARC domain |
XP_057793120.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 448 | 519 | 1e-15 | 58.2 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。