当前解析结果
SmilChr01G003328| 统一新 Gene ID | SmilChr01G003328 |
|---|---|
| 名称 | SmilChr01G003328 |
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51969603 - 51972266 / + |
| NCBI Gene ID | LOC131009734 |
|---|---|
| GeneID | 131009734 |
| locus_tag | - |
| NCBI Name | LOC131009734 |
| 原始查询 | SmilChr01G003328 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 产物 | putative late blight resistance protein homolog R1B-14 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.2; qcov=1.02; evalue=1.2e-68; confidence=low |
| Rice | Os07g0186500- identity=30.5; qcov=0.809; evalue=9.34e-77; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009734 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057793126.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057793126.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793126.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793126.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793126.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51969634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,C55,D8 |
Chr1:51969635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B46,B89,C3,D8 |
Chr1:51969640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,C55,D8 |
Chr1:51969656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C25,C30,D3 |
Chr1:51969674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B13,B140,C26,C55,D8 |
Chr1:51969709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr1:51969794 |
TCA |
T |
2bp_deletion | frameshift_variant | 2 | B129,B59 |
Chr1:51969794 |
TCA |
T |
2bp_deletion | CDS_variant | 2 | B129,B59 |
Chr1:51969964 |
AAG |
A |
2bp_deletion | frameshift_variant | 9 | A16,A2,A8,B44,C16,C20,C68,C72,D1 |
Chr1:51969968 |
G |
GCA |
2bp_insertion | frameshift_variant | 9 | A16,A2,A8,B44,C16,C20,C68,C72,D1 |
Chr1:51969970 |
T |
TCA |
2bp_insertion | frameshift_variant | 35 | A16,A2,A8,B100,B115,B120,B134,B135,B19,B22,B28,B40,B42,B43,B44,B47,B54,B62,B95,B97,C16,C19,C2,C20,C22,C28,C34,C46,C48,C55,C59,C68,C72,D1,D3 |
Chr1:51969972 |
ACG |
A |
2bp_deletion | frameshift_variant | 35 | A16,A2,A8,B100,B115,B120,B134,B135,B19,B22,B28,B40,B42,B43,B44,B54,B62,B63,B95,B97,C16,C19,C2,C20,C22,C28,C34,C46,C48,C55,C59,C68,C72,D1,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793126.1PF00931
NB-ARC 165-327 aa
PF23559
WHD_DRP 412-483 aa
PF23598
LRR_14 535-736 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793126.1 |
Pfam | PF00931 |
NB-ARC | Domain | 165 | 327 | 2.4e-39 | 135.4 | NB-ARC domain |
XP_057793126.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 412 | 483 | 2.1e-18 | 66.8 | Disease resistance protein Winged helix domain |
XP_057793126.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 535 | 736 | 1.1e-21 | 77.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。