Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003372`

染色体: Chr01 坐标: 52436918-52440748 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003372`
名称	SmilChr01G003372
描述	pentatricopeptide repeat-containing protein At3g21470
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52436918 - 52440748 / `-`

ID 对照

NCBI Gene ID	`LOC130992469`
GeneID	`130992469`
locus_tag	`-`
NCBI Name	`LOC130992469`
原始查询	`SmilChr01G003372`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g21470
产物	pentatricopeptide repeat-containing protein At3g21470
Arabidopsis	`AT3G21470` (AT3G21470) Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821701] identity=49.9; qcov=1.01; evalue=4.02e-171; confidence=high
Rice	`Os01g0880900` - identity=49; qcov=0.927; evalue=9.21e-155; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130992469

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057773098.1`
2	Chloroplast	叶绿体	0.40000	`XP_057773098.1`
3	Nucleus	细胞核	0.00000	`XP_057773098.1`
4	Chromosome	染色体	0.00000	`XP_057773098.1`
5	Centromere	着丝粒	0.00000	`XP_057773098.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52439089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,A8,C19
`Chr1:52439234`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B70
`Chr1:52439234`	`AC`	`A`	1bp_deletion	CDS_variant	1	B70
`Chr1:52439386`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C42
`Chr1:52439386`	`AG`	`A`	1bp_deletion	CDS_variant	1	C42
`Chr1:52439442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B6
`Chr1:52439985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:52440140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr1:52440213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A8,C19
`Chr1:52440339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr1:52440584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773098.1

510 aa

255

510

PPR

PPR_2

PPR

TPR_24

PPR

PPR_2

PPR

PF01535 PPR 80-107 aa PF01535 PPR 108-136 aa PF01535 PPR 140-162 aa PF01535 PPR 172-201 aa PF01535 PPR 204-231 aa PF13041 PPR_2 232-279 aa PF01535 PPR 234-264 aa PF23276 TPR_24 236-328 aa PF01535 PPR 306-330 aa PF13041 PPR_2 334-382 aa PF01535 PPR 336-363 aa PF01535 PPR 371-401 aa PF01535 PPR 408-431 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	80	107	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	108	136	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	140	162	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	172	201	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	204	231	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF13041`	PPR_2	Repeat	232	279	2.5e-62	207.5	PPR repeat family
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	234	264	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF23276`	TPR_24	Repeat	236	328	4.6e-20	72.6	Pentatricopeptide repeat-containing protein
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	306	330	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF13041`	PPR_2	Repeat	334	382	2.5e-62	207.5	PPR repeat family
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	336	363	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	371	401	1.3e-69	226.4	PPR repeat
`XP_057773098.1`	Pfam	`PF01535`	PPR	Repeat	408	431	1.3e-69	226.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917115.1
CAAATGTTATAAAATTACTACCACGTTTGAATTTGGGTGGAAAGACTAAATTGGGTCTTTTAACGCTATTATTACCTTTTATTTCTCATTTTTTTTGCCACAAAGACGAAAGCCAACACCGCTCCCCATCAATGAGCATGGAGAGCTCAAACACCAGCTTGTTTCACACCATCAAAAACTGCATAACCCACAAAAAACCCAAAGCCGCAATCTCCGCGTACATCCACGGCCGCGGCGGCATCGTGATCGTGATCGCCGCC...

CDS

1 records

下载 CDS FASTA

LOC130992469
ATGAGCATGGAGAGCTCAAACACCAGCTTGTTTCACACCATCAAAAACTGCATAACCCACAAAAAACCCAAAGCCGCAATCTCCGCGTACATCCACGGCCGCGGCGGCATCGTGATCGTGATCGCCGCCGTCCCATTAGTCCTCAAAGCCTGCGCTTCCCTTTCTTTGCTCAGCTTCGGGAAAGCTCTGCATTCCGAAATCCTGAAGTCGGGAGTTGAACGCAACGTGATGGTTGGGACCTCGTTAGTCGATATGTACGG...

Protein

1 records

下载 Protein FASTA

XP_057773098.1
MSMESSNTSLFHTIKNCITHKKPKAAISAYIHGRGGIVIVIAAVPLVLKACASLSLLSFGKALHSEILKSGVERNVMVGTSLVDMYGKCGDIASACKMFDEMPDRNVVSWNAMIGGYMRNGDTAAASALFAAMTERTSATWNAMIDGYARNGDTAAARRVFDAVPEALRNVVTWTAMVDVYATSGDMEAAREAFEAMGMRNFYAWSVMIKGYFKRGDAARAREVFDGMSLRNLVIWNSLISGYAQNGMFGEAMDAFTMMQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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