Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003389`

染色体: Chr01 坐标: 52579152-52583019 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003389`
名称	SmilChr01G003389
描述	WAT1-related protein At1g43650-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52579152 - 52583019 / `-`

ID 对照

NCBI Gene ID	`LOC130992991`
GeneID	`130992991`
locus_tag	`-`
NCBI Name	`LOC130992991`
原始查询	`SmilChr01G003389`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At1g43650-like
产物	WAT1-related protein At1g43650-like
Arabidopsis	`AT1G43650` (UMAMIT22) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:840949] identity=40.2; qcov=1.14; evalue=6.41e-74; confidence=medium
Rice	`Os05g0106200` (OsUMAMIT8) - identity=34.8; qcov=1.12; evalue=1.36e-56; confidence=low
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:130992991

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057773696.1`
2	Vacuole	液泡	0.20000	`XP_057773696.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057773696.1`
4	Nucleus	细胞核	0.00000	`XP_057773696.1`
5	Chromosome	染色体	0.00000	`XP_057773696.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52579324`	`A`	`AC`	1bp_insertion	frameshift_variant	1	B78
`Chr1:52579324`	`A`	`AC`	1bp_insertion	CDS_variant	1	B78
`Chr1:52580941`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C7
`Chr1:52580941`	`TC`	`T`	1bp_deletion	CDS_variant	1	C7
`Chr1:52581991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:52582673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr1:52582835`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C58
`Chr1:52582835`	`AT`	`A`	1bp_deletion	CDS_variant	1	C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773696.1

353 aa

176

353

EamA

PF00892 EamA 15-149 aa PF00892 EamA 193-330 aa

XP_057773703.1

300 aa

150

300

EamA

PF00892 EamA 15-149 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773696.1`	Pfam	`PF00892`	EamA	Domain	15	149	2.7e-32	112.6	EamA-like transporter family
`XP_057773696.1`	Pfam	`PF00892`	EamA	Domain	193	330	2.7e-32	112.6	EamA-like transporter family
`XP_057773703.1`	Pfam	`PF00892`	EamA	Domain	15	149	3.3e-24	86.4	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917713.1
CTTGCCCTCAAACTCAAACTCAAATTATATCAATGAATGAACCCTCTTTTGATTTACATATGTCTTATCACTGATCTATATAAACTATAACTTGGAAGAGCTTGCCATTTTATATTTCCACATTATTTAAACTCAAGATCGTTTTTTCTTTTCTTAGAGAGAGTAAGATGGGAAAATCATTTAATATGGTGAAAATATTGGAGAAAAAAAAGGCCTATATAGTAATGATATTAGTGCAGTTAGCATATGCAGGGATGTCT...

XM_057917720.1
ATGTCTTATCACTGATCTATATAAACTATAACTTGGAAGAGCTTGCCATTTTATATTTCCACATTATTTAAACTCAAGATCGTTTTTTCTTTTCTTAGAGAGAGTAAGATGGGAAAATCATTTAATATGGTGAAAATATTGGAGAAAAAAAAGGCCTATATAGTAATGATATTAGTGCAGTTAGCATATGCAGGGATGTCTCTCTTCTCTAAAACATCAATAAATAAAGGAATGAATCCATTTGTCTTTGTTGCCTATCG...

CDS

2 records

下载 CDS FASTA

LOC130992991
ATGGGAAAATCATTTAATATGGTGAAAATATTGGAGAAAAAAAAGGCCTATATAGTAATGATATTAGTGCAGTTAGCATATGCAGGGATGTCTCTCTTCTCTAAAACATCAATAAATAAAGGAATGAATCCATTTGTCTTTGTTGCCTATCGCCAAGCATTTGCTACTCTTGCTTTGCTCCCTTTTGCTCTATTTCTCGACAGGAAAAAAGGACGTGATTCATTGACATACAGCCTATTATGGAAAATTTTTTTGGTTTC...

Protein

2 records

下载 Protein FASTA

XP_057773696.1
MGKSFNMVKILEKKKAYIVMILVQLAYAGMSLFSKTSINKGMNPFVFVAYRQAFATLALLPFALFLDRKKGRDSLTYSLLWKIFLVSLFGITLSLNLYIYAINYVSATFASASNNSIPAFTFAIAVGLRIERFSIRDLSGIVKLVGAVVSFSGAMVFAFVKGPQFSILNLCEATRSMRNPSTDFSSEEKWIQGCLLMLLANIIWASWLVMQAPLVKQYPAKFGLTMLQCLFSCLQSTVWGIAMQRDISWWKLTWDFNLLS...

XP_057773703.1
MGKSFNMVKILEKKKAYIVMILVQLAYAGMSLFSKTSINKGMNPFVFVAYRQAFATLALLPFALFLDRKKGRDSLTYSLLWKIFLVSLFGITLSLNLYIYAINYVSATFASASNNSIPAFTFAIAVGLRIERFSIRDLSGIVKLVGAVVSFSGAMVFAFVKGPQFSILNLCEATRSMRNPSTDFSSEEKWIQGCLLMLLANIIWASWLVMQGVVVTGISYWLFLWAVESKGPLFTASFTPLQLIFTATFSAFLWNEMLHI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器