Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003411`

染色体: Chr01 坐标: 52764147-52770005 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003411`
名称	SmilChr01G003411
描述	sterol 3-beta-glucosyltransferase UGT80B1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52764147 - 52770005 / `+`

ID 对照

NCBI Gene ID	`LOC130992645`
GeneID	`130992645`
locus_tag	`-`
NCBI Name	`LOC130992645`
原始查询	`SmilChr01G003411`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sterol 3-beta-glucosyltransferase UGT80B1-like
产物	sterol 3-beta-glucosyltransferase UGT80B1-like
Arabidopsis	`AT1G43620` (UGT80B1) UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840946] identity=53.6; qcov=0.576; evalue=8.08e-65; confidence=medium
Rice	`Os01g0867600` - identity=60.1; qcov=0.558; evalue=1.7e-69; confidence=medium
GO	GO:0005975 (carbohydrate metabolic process); GO:0008194 (UDP-glycosyltransferase activity); GO:0016758 (hexosyltransferase activity); GO:0030259 (GO:0030259)
KEGG	-
Pfam	PF00201 (UDPGT); PF03033 (Glyco_transf_28); PF06722 (EryCIII-like_C)
InterPro	-
eggNOG	-
NR	GeneID:130992645

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057773357.1`
2	Cytosol	细胞质基质	0.60000	`XP_057773367.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057773357.1`
4	Chloroplast	叶绿体	0.20000	`XP_057773367.1`
5	Nucleus	细胞核	0.00000	`XP_057773357.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52764651`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:52765267`	`GC`	`G`	1bp_deletion	frameshift_variant	12	A9,B112,B123,B130,B14,B23,B66,B7,C10,C33,C45,C50
`Chr1:52765945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C12,C62
`Chr1:52767042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:52767120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr1:52768400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:52768412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:52769444`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A10
`Chr1:52769444`	`TG`	`T`	1bp_deletion	CDS_variant	1	A10
`Chr1:52769738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:52769746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,C41
`Chr1:52769778`	`AC`	`A`	1bp_deletion	frameshift_variant	3	B125,B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773357.1

440 aa

220

440

Glyco_transf_28

UDPGT

EryCIII-like_C

PF03033 Glyco_transf_28 13-157 aa PF00201 UDPGT 247-404 aa PF06722 EryCIII-like_C 307-409 aa

XP_057773367.1

337 aa

168

337

Glyco_transf_28

EryCIII-like_C

PF03033 Glyco_transf_28 13-157 aa PF06722 EryCIII-like_C 204-306 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773357.1`	Pfam	`PF03033`	Glyco_transf_28	Family	13	157	1.8e-25	90.4	Glycosyltransferase family 28 N-terminal domain
`XP_057773357.1`	Pfam	`PF00201`	UDPGT	Family	247	404	1.7e-05	24.6	UDP-glucoronosyl and UDP-glucosyl transferase
`XP_057773357.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	307	409	3.4e-11	44.0	Erythromycin biosynthesis protein CIII-like, C-terminal domain
`XP_057773367.1`	Pfam	`PF03033`	Glyco_transf_28	Family	13	157	9.8e-26	91.2	Glycosyltransferase family 28 N-terminal domain
`XP_057773367.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	204	306	2.1e-11	44.7	Erythromycin biosynthesis protein CIII-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917374.1
TTTGCGGTCGTTGATTGTATTGAAAGTGCAAGTCTTTTATTGAGTGAGTGATTGAGGAAATATACTTAAGTTGTTTGTAGTGATGAACGACTGCAAAAATAAAATACCAAAGTTGAAGATTGCCCTTCTTGTAGTTGGAACAAGAGGAGATGTTCAGCCTTTTCTGGCTTTGGCCTTGAGACTTCAAGAATATGGGCATTACGTGAGGTTGGCAACTCATTCACAATTCCATGGATTTGTGAAGTCAGTTGGTGTGGATT...

XM_057917384.1
TGCGGTCGTTGATTGTATTGAAAGTGCAAGTCTTTTATTGAGTGAGTGATTGAGGAAATATACTTAAGTTGTTTGTAGTGATGAACGACTGCAAAAATAAAATACCAAAGTTGAAGATTGCCCTTCTTGTAGTTGGAACAAGAGGAGATGTTCAGCCTTTTCTGGCTTTGGCCTTGAGACTTCAAGAATATGGGCATTACGTGAGGTTGGCAACTCATTCACAATTCCATGGATTTGTGAAGTCAGTTGGTGTGGATTTC...

CDS

2 records

下载 CDS FASTA

LOC130992645
ATGAACGACTGCAAAAATAAAATACCAAAGTTGAAGATTGCCCTTCTTGTAGTTGGAACAAGAGGAGATGTTCAGCCTTTTCTGGCTTTGGCCTTGAGACTTCAAGAATATGGGCATTACGTGAGGTTGGCAACTCATTCACAATTCCATGGATTTGTGAAGTCAGTTGGTGTGGATTTCTATCCACTTGGCGGCGACCCTCGCATCATGGCTGAATGCTTCGTGAGAGCTAGAAGTATTCTTTTGCCCCGACCCGGAGA...

Protein

2 records

下载 Protein FASTA

XP_057773357.1
MNDCKNKIPKLKIALLVVGTRGDVQPFLALALRLQEYGHYVRLATHSQFHGFVKSVGVDFYPLGGDPRIMAECFVRARSILLPRPGDMALQRKQLKAIIESLLPACTQPDPVSGEPFTAQAIIANPPAFGSKDIAEALDVPLHIMFTVPWTPTRAFPHPFTQRAGRLSYALADLMIWLGIRGFINEVRTNKLNLGPIGYFNSGHVSISQLPTSYMWSSHVLPKPNDWGPLVDVVGYCFLNLGTKYEPSQDFVDWIQKGSK...

XP_057773367.1
MNDCKNKIPKLKIALLVVGTRGDVQPFLALALRLQEYGHYVRLATHSQFHGFVKSVGVDFYPLGGDPRIMAECFVRARSILLPRPGDMALQRKQLKAIIESLLPACTQPDPVSGEPFTAQAIIANPPAFGSKDIAEALDVPLHIMFTVPWTPTRAFPHPFTQRAGRPLKKSEKLTAMILEALKKTGQRGIIDPGWGDLGTNVDISDDVFVLSDCPHDWLFPQCYAVVHHGGPGTAAAGVKAGCPTMVVPFCGDQFLWGEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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