当前解析结果
SmilChr01G003471| 统一新 Gene ID | SmilChr01G003471 |
|---|---|
| 名称 | SmilChr01G003471 |
| 描述 | peroxidase 64-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 53252196 - 53253778 / + |
| NCBI Gene ID | LOC130992989 |
|---|---|
| GeneID | 130992989 |
| locus_tag | - |
| NCBI Name | LOC130992989 |
| 原始查询 | SmilChr01G003471 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 64-like |
| 产物 | peroxidase 64-like |
| Arabidopsis | AT5G42180 (PER64)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834223] identity=66.7; qcov=0.997; evalue=2.2e-159; confidence=high |
| Rice | Os02g0833900 (prx32)- identity=57.2; qcov=0.981; evalue=2.6e-127; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0009505 (plant-type cell wall); GO:0009506 (plasmodesma); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992989 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057773687.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057773687.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057773687.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773687.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773687.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:53252318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:53252324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B60,B72,C31,C84 |
Chr1:53252568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr1:53252854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B40,B5,C52,C76 |
Chr1:53252861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr1:53253246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C10 |
Chr1:53253264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,C20 |
Chr1:53253282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr1:53253305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr1:53253324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C21,D11 |
Chr1:53253447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,B54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773687.1PF00141
peroxidase 42-286 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773687.1 |
Pfam | PF00141 |
peroxidase | Domain | 42 | 286 | 8.1e-82 | 275.3 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。