Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003479`

染色体: Chr01 坐标: 53353036-53357047 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003479`
名称	SmilChr01G003479
描述	thioredoxin Y2, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	53353036 - 53357047 / `+`

ID 对照

NCBI Gene ID	`LOC130993244`
GeneID	`130993244`
locus_tag	`-`
NCBI Name	`LOC130993244`
原始查询	`SmilChr01G003479`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	thioredoxin Y2, chloroplastic-like
产物	thioredoxin Y2%2C chloroplastic-like
Arabidopsis	`AT1G43560` (ty2) thioredoxin Y2 [Source:NCBI gene (formerly Entrezgene);Acc:840939] identity=60.4; qcov=1.01; evalue=4.72e-66; confidence=high
Rice	`Os01g0963400` - identity=70.4; qcov=0.685; evalue=2.22e-58; confidence=high
GO	GO:0005737 (cytoplasm); GO:0015035 (protein-disulfide reductase activity); GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor)
KEGG	-
Pfam	PF00085 (Thioredoxin); PF13098 (Thioredoxin_2); PF14595 (Thioredoxin_9)
InterPro	-
eggNOG	-
NR	GeneID:130993244

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057774055.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057774055.1`
3	Nucleus	细胞核	0.00000	`XP_057774055.1`
4	Chromosome	染色体	0.00000	`XP_057774055.1`
5	Centromere	着丝粒	0.00000	`XP_057774055.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774055.1

168 aa

168

Thioredoxin

Thioredoxin_2

Thioredoxin_9

PF00085 Thioredoxin 65-161 aa PF13098 Thioredoxin_2 74-161 aa PF14595 Thioredoxin_9 79-140 aa

XP_057774059.1

168 aa

168

Thioredoxin

Thioredoxin_2

Thioredoxin_9

PF00085 Thioredoxin 65-161 aa PF13098 Thioredoxin_2 74-161 aa PF14595 Thioredoxin_9 79-140 aa

XP_057774068.1

168 aa

168

Thioredoxin

Thioredoxin_2

Thioredoxin_9

PF00085 Thioredoxin 65-161 aa PF13098 Thioredoxin_2 74-161 aa PF14595 Thioredoxin_9 79-140 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774055.1`	Pfam	`PF00085`	Thioredoxin	Domain	65	161	2.2e-29	102.2	Thioredoxin
`XP_057774055.1`	Pfam	`PF13098`	Thioredoxin_2	Domain	74	161	5.8e-11	43.5	Thioredoxin-like domain
`XP_057774055.1`	Pfam	`PF14595`	Thioredoxin_9	Family	79	140	7.2e-06	26.6	Thioredoxin
`XP_057774059.1`	Pfam	`PF00085`	Thioredoxin	Domain	65	161	2.2e-29	102.2	Thioredoxin
`XP_057774059.1`	Pfam	`PF13098`	Thioredoxin_2	Domain	74	161	5.8e-11	43.5	Thioredoxin-like domain
`XP_057774059.1`	Pfam	`PF14595`	Thioredoxin_9	Family	79	140	7.2e-06	26.6	Thioredoxin
`XP_057774068.1`	Pfam	`PF00085`	Thioredoxin	Domain	65	161	2.2e-29	102.2	Thioredoxin
`XP_057774068.1`	Pfam	`PF13098`	Thioredoxin_2	Domain	74	161	5.8e-11	43.5	Thioredoxin-like domain
`XP_057774068.1`	Pfam	`PF14595`	Thioredoxin_9	Family	79	140	7.2e-06	26.6	Thioredoxin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057918076.1
CCAGTCATCCACCCCTTCCACTTCTGTAAATCTCCAAACTCGTCTCCCAATTTCCCTCCCAAAAATGGCGATTTCTTTAGCGGCGGCAATCACCACAACCGCCGTCCGGCTATGTCCTTCTTCTTCACCTGATAGCTCGAAGCTTTCACACTTTTCTTCTCTTCAGTTCCCGTCGGAGCTCCGAAATTTCCGGAGCCACCACGTTAAATCTCGCCTGCGACGTCGTACGCTTGCTCTGGTTGCATCGAAGAACCAGACAT...

XM_057918085.1
CCAGTCATCCACCCCTTCCACTTCTGTAAATCTCCAAACTCGTCTCCCAATTTCCCTCCCAAAAATGGCGATTTCTTTAGCGGCGGCAATCACCACAACCGCCGTCCGGCTATGTCCTTCTTCTTCACCTGATAGCTCGAAGCTTTCACACTTTTCTTCTCTTCAGTTCCCGTCGGAGCTCCGAAATTTCCGGAGCCACCACGTTAAATCTCGCCTGCGACGTCGTACGCTTGCTCTGGTTGCATCGAAGAACCAGACAT...

CDS

3 records

下载 CDS FASTA

LOC130993244
ATGGCGATTTCTTTAGCGGCGGCAATCACCACAACCGCCGTCCGGCTATGTCCTTCTTCTTCACCTGATAGCTCGAAGCTTTCACACTTTTCTTCTCTTCAGTTCCCGTCGGAGCTCCGAAATTTCCGGAGCCACCACGTTAAATCTCGCCTGCGACGTCGTACGCTTGCTCTGGTTGCATCGAAGAACCAGACATTTTCGTCATTTGATGAGTTGTTGGAAAAATCTAATAAACCAGTGTTGGTGGACTTCTATGCTAC...

Protein

3 records

下载 Protein FASTA

XP_057774055.1
MAISLAAAITTTAVRLCPSSSPDSSKLSHFSSLQFPSELRNFRSHHVKSRLRRRTLALVASKNQTFSSFDELLEKSNKPVLVDFYATWCGPCQFMVPVLEQVSASLIDKIQVVKIDTEKYPAIADKYQIQALPTFILFKDGKPFDRFEGAMGADQLIERVEASLQVKQ

XP_057774059.1
MAISLAAAITTTAVRLCPSSSPDSSKLSHFSSLQFPSELRNFRSHHVKSRLRRRTLALVASKNQTFSSFDELLEKSNKPVLVDFYATWCGPCQFMVPVLEQVSASLIDKIQVVKIDTEKYPAIADKYQIQALPTFILFKDGKPFDRFEGAMGADQLIERVEASLQVKQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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