Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003485`

染色体: Chr01 坐标: 53414664-53416992 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003485`
名称	SmilChr01G003485
描述	putative receptor-like protein kinase At3g47110
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	53414664 - 53416992 / `-`

ID 对照

NCBI Gene ID	`LOC130992232`
GeneID	`130992232`
locus_tag	`-`
NCBI Name	`LOC130992232`
原始查询	`SmilChr01G003485`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative receptor-like protein kinase At3g47110
产物	putative receptor-like protein kinase At3g47110
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=45.8; qcov=1; evalue=1.16e-180; confidence=high
Rice	`Os02g0215500` - identity=45.5; qcov=1; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130992232

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057772770.1`
2	Nucleus	细胞核	0.00000	`XP_057772770.1`
3	Chromosome	染色体	0.00000	`XP_057772770.1`
4	Centromere	着丝粒	0.00000	`XP_057772770.1`
5	Chromatin	染色质	0.00000	`XP_057772770.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:53414869`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C25
`Chr1:53414869`	`AC`	`A`	1bp_deletion	CDS_variant	1	C25
`Chr1:53415369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr1:53415413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C48
`Chr1:53415431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:53415571`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C48
`Chr1:53415571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:53415589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr1:53415769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:53415796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr1:53415881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr1:53416003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B30,B44,B55,B76,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772770.1

641 aa

320

641

LRR_1

LRR_8

LRR_6

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 22-43 aa PF00560 LRR_1 45-67 aa PF00560 LRR_1 70-91 aa PF13855 LRR_8 73-128 aa PF13516 LRR_6 90-106 aa PF00560 LRR_1 93-111 aa PF13855 LRR_8 116-176 aa PF00560 LRR_1 117-139 aa PF00560 LRR_1 141-163 aa PF00560 LRR_1 165-187 aa PF00560 LRR_1 190-209 aa PF00069 Pkinase 327-544 aa PF07714 PK_Tyr_Ser-Thr 330-546 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	22	43	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	45	67	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	70	91	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF13855`	LRR_8	Repeat	73	128	9.1e-23	80.5	Leucine rich repeat
`XP_057772770.1`	Pfam	`PF13516`	LRR_6	Repeat	90	106	5.3e-07	29.9	Leucine Rich repeat
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	93	111	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF13855`	LRR_8	Repeat	116	176	9.1e-23	80.5	Leucine rich repeat
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	117	139	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	141	163	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	165	187	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF00560`	LRR_1	Repeat	190	209	5.3e-29	94.7	Leucine Rich Repeat
`XP_057772770.1`	Pfam	`PF00069`	Pkinase	Domain	327	544	2.9e-36	125.9	Protein kinase domain
`XP_057772770.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	330	546	5.2e-38	131.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916787.1
GGAGGGGAGGAGCAGAGGATTTGAGCTTCGTCGCCTCATTGAAGAACGCTACAAACTTAGCTAGTTTAGGCCTAGATGGAAACAGCTTTGGTGGGGTGCTGCCTCCTGCATTTTGGAACCTCTCCACCACCATTTCAAGGATGTTCTTGAGCCAGAATCAGATCTCCGGCACTATTCCAGACGACATGGGGAAGTTTGTCGAGCTGCAGGATCTAAGGGTGAACAATAACAGATTCTTAGGCATGATCCCTTCTAGCATA...

CDS

1 records

下载 CDS FASTA

LOC130992232
ATGTTCTTGAGCCAGAATCAGATCTCCGGCACTATTCCAGACGACATGGGGAAGTTTGTCGAGCTGCAGGATCTAAGGGTGAACAATAACAGATTCTTAGGCATGATCCCTTCTAGCATAGGACGCCTTCGAAATCTGCAGTTCTTGGACTTGTCTGGCAACGATTTCTCGAGCAGAATCCCCTCTACTATTGGAAATTTGAGCCTTCTGCTTTATATGTATCTCTCTTACAACAATCTTGGCAGTTTTATACCATCAAG...

Protein

1 records

下载 Protein FASTA

XP_057772770.1
MFLSQNQISGTIPDDMGKFVELQDLRVNNNRFLGMIPSSIGRLRNLQFLDLSGNDFSSRIPSTIGNLSLLLYMYLSYNNLGSFIPSSIGNCQKLLELNLSRNGLTGSLPKEVVSIPSLRSMDLSQNQLNSTLPAEIGSLKNLEYFNVSRNGLVGSVPNSVGGCVKLEFLDLQGNSLRGNIPSSLSALRGLRVLDLSRNRFDGLVPEYLAEFTLLALNLSFNDLEGALPQGGVFNNASAVSVAGNPKLCGGVPELRLPKCN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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