当前解析结果
SmilChr01G003486| 统一新 Gene ID | SmilChr01G003486 |
|---|---|
| 名称 | SmilChr01G003486 |
| 描述 | putative receptor-like protein kinase At3g47110 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 53416969 - 53418129 / - |
| NCBI Gene ID | LOC130992951 |
|---|---|
| GeneID | 130992951 |
| locus_tag | - |
| NCBI Name | LOC130992951 |
| 原始查询 | SmilChr01G003486 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor-like protein kinase At3g47110 |
| 产物 | putative receptor-like protein kinase At3g47110 |
| Arabidopsis | AT5G20480 (EFR)EF-TU receptor [Source:NCBI gene (formerly Entrezgene);Acc:832170] identity=43; qcov=0.829; evalue=1.89e-68; confidence=medium |
| Rice | Os10g0375000 (YK19)- identity=40.8; qcov=0.854; evalue=3.06e-71; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992951 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057773660.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057773660.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057773660.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057773660.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057773660.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:53417042 |
A |
AC |
1bp_insertion | frameshift_variant | 15 | A6,B100,B106,B122,B130,B15,B16,B26,B93,C39,C56,C77,C8,C83,C86 |
Chr1:53417062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B73,B85,C24 |
Chr1:53417142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,C82 |
Chr1:53417152 |
CT |
C |
1bp_deletion | frameshift_variant | 13 | A1,A9,B102,B117,B53,B57,B60,B71,B88,C3,C51,C53,D7 |
Chr1:53417157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B40,C12,C18,C48 |
Chr1:53417194 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C48 |
Chr1:53417194 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C48 |
Chr1:53417363 |
T |
TAC |
2bp_insertion | frameshift_variant | 7 | A25,B40,B53,C12,C18,C49,C62 |
Chr1:53417432 |
A |
AG |
1bp_insertion | frameshift_variant | 15 | A13,A14,A20,B100,B112,B113,B131,B49,B57,B92,C15,C16,C32,C39,D7 |
Chr1:53417436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B97,C43,C53 |
Chr1:53417441 |
AGC |
A |
2bp_deletion | frameshift_variant | 2 | B39,C76 |
Chr1:53417441 |
AGC |
A |
2bp_deletion | CDS_variant | 2 | B39,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773660.1PF08263
LRRNT_2 58-96 aa
PF23598
LRR_14 116-224 aa
PF00560
LRR_1 126-147 aa
PF00560
LRR_1 150-171 aa
PF00560
LRR_1 198-219 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773660.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 58 | 96 | 5.5e-13 | 49.7 | Leucine rich repeat N-terminal domain |
XP_057773660.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 116 | 224 | 6.3e-16 | 58.8 | Leucine-rich repeat region |
XP_057773660.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 126 | 147 | 4.8e-17 | 59.1 | Leucine Rich Repeat |
XP_057773660.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 150 | 171 | 4.8e-17 | 59.1 | Leucine Rich Repeat |
XP_057773660.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 198 | 219 | 4.8e-17 | 59.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。