当前解析结果
SmilChr01G003519| 统一新 Gene ID | SmilChr01G003519 |
|---|---|
| 名称 | SmilChr01G003519 |
| 描述 | uncharacterized protein At1g76070-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 53836766 - 53837979 / - |
| NCBI Gene ID | LOC130994314 |
|---|---|
| GeneID | 130994314 |
| locus_tag | - |
| NCBI Name | LOC130994314 |
| 原始查询 | SmilChr01G003519 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843939]; symbol=AT1G76070; hit=AT1G76070; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843939]; symbol=AT1G76070; hit=AT1G76070; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G76070 (AT1G76070)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843939] identity=35.7; qcov=1.08; evalue=3.42e-26; confidence=medium |
| Rice | Os09g0542900- identity=41; qcov=0.349; evalue=7.33e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF30939 (At1g76070) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994314 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057775345.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057775345.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057775345.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775345.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775345.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:53836988 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C19 |
Chr1:53836988 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C19 |
Chr1:53837124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B128,B78,C53,C67 |
Chr1:53837274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:53837388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B24,B78,C48,C58,C6 |
Chr1:53837408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B31,B56,B96 |
Chr1:53837430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775345.1PF30939
At1g76070 1-236 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775345.1 |
Pfam | PF30939 |
At1g76070 | Family | 1 | 236 | 1.3e-65 | 222.5 | Syringolide-induced protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。