当前解析结果
SmilChr01G003533| 统一新 Gene ID | SmilChr01G003533 |
|---|---|
| 名称 | SmilChr01G003533 |
| 描述 | ribonucleoside-diphosphate reductase large subunit |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 53951082 - 53956762 / + |
| NCBI Gene ID | LOC130993720 |
|---|---|
| GeneID | 130993720 |
| locus_tag | - |
| NCBI Name | LOC130993720 |
| 原始查询 | SmilChr01G003533 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ribonucleoside-diphosphate reductase large subunit |
| 产物 | ribonucleoside-diphosphate reductase large subunit |
| Arabidopsis | AT2G21790 (RNR1)ribonucleotide reductase 1 [Source:NCBI gene (formerly Entrezgene);Acc:816715] identity=84.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0168600 (V3)- identity=86.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0004748 (ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor); GO:0005524 (ATP binding); GO:0005971 (ribonucleoside-diphosphate reductase complex); GO:0006260 (DNA replication); GO:0009263 (deoxyribonucleotide biosynthetic process) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00317 (Ribonuc_red_lgN); PF02867 (Ribonuc_red_lgC); PF03477 (ATP-cone) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993720 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774742.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057774742.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057774742.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774742.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774742.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:53953054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr1:53953930 |
G |
GAA |
2bp_insertion | stop_gained,frameshift_variant | 4 | B44,C19,C31,C35 |
Chr1:53953930 |
G |
GAA |
2bp_insertion | CDS_variant | 4 | B44,C19,C31,C35 |
Chr1:53954208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:53954257 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B109,B133,B16,B31,C71,C81 |
Chr1:53954384 |
CT |
C |
1bp_deletion | frameshift_variant | 5 | A22,C16,C33,C58,C63 |
Chr1:53954384 |
CT |
C |
1bp_deletion | CDS_variant | 5 | A22,C16,C33,C58,C63 |
Chr1:53954404 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B10,B107,B133,B16,B31,C71 |
Chr1:53954406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B49,D7 |
Chr1:53954409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B57,B67,B75,B83 |
Chr1:53954416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B57,B67,B75,B83 |
Chr1:53954463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774742.1PF03477
ATP-cone 1-88 aa
PF00317
Ribonuc_red_lgN 142-212 aa
PF02867
Ribonuc_red_lgC 216-757 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774742.1 |
Pfam | PF03477 |
ATP-cone | Domain | 1 | 88 | 1e-13 | 52.4 | ATP cone domain |
XP_057774742.1 |
Pfam | PF00317 |
Ribonuc_red_lgN | Domain | 142 | 212 | 1.2e-25 | 90.0 | Ribonucleotide reductase, all-alpha domain |
XP_057774742.1 |
Pfam | PF02867 |
Ribonuc_red_lgC | Family | 216 | 757 | 6.6e-220 | 731.9 | Ribonucleotide reductase, barrel domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。