当前解析结果
SmilChr01G003549| 统一新 Gene ID | SmilChr01G003549 |
|---|---|
| 名称 | SmilChr01G003549 |
| 描述 | systemin receptor SR160-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 54093796 - 54097974 / + |
| NCBI Gene ID | LOC130993667 |
|---|---|
| GeneID | 130993667 |
| locus_tag | - |
| NCBI Name | LOC130993667 |
| 原始查询 | SmilChr01G003549 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | systemin receptor SR160-like |
| 产物 | systemin receptor SR160-like |
| Arabidopsis | AT4G39400 (BRI1)Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830095] identity=65.7; qcov=0.978; evalue=0; confidence=high |
| Rice | Os01g0718300 (D61)- identity=53.8; qcov=0.972; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0009755 (hormone-mediated signaling pathway) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF07723 (LRR_2); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF20141 (Island) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993667 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774641.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774641.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774641.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774641.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774641.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:54094271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C58 |
Chr1:54094351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr1:54094433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:54094517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B25,B32,C27,C3 |
Chr1:54094613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:54094660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr1:54094670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,B33,B76 |
Chr1:54094672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,C6,C63 |
Chr1:54094673 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,C6,C63 |
Chr1:54094695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C75 |
Chr1:54094718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,B9 |
Chr1:54095597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B130,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774641.1PF08263
LRRNT_2 38-73 aa
PF13516
LRR_6 180-194 aa
PF00560
LRR_1 181-196 aa
PF07723
LRR_2 181-204 aa
PF13855
LRR_8 208-265 aa
PF13855
LRR_8 249-289 aa
PF13516
LRR_6 252-267 aa
PF00560
LRR_1 254-276 aa
PF13516
LRR_6 324-339 aa
PF00560
LRR_1 327-347 aa
PF13855
LRR_8 374-435 aa
PF00560
LRR_1 375-397 aa
PF13516
LRR_6 397-411 aa
PF00560
LRR_1 399-419 aa
PF00560
LRR_1 426-448 aa
PF00560
LRR_1 450-472 aa
PF00560
LRR_1 498-520 aa
PF00560
LRR_1 523-544 aa
PF20141
Island 594-658 aa
PF00560
LRR_1 687-708 aa
PF00560
LRR_1 713-732 aa
PF00069
Pkinase 887-1157 aa
PF07714
PK_Tyr_Ser-Thr 890-1155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774641.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 38 | 73 | 1.9e-09 | 38.3 | Leucine rich repeat N-terminal domain |
XP_057774641.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 180 | 194 | 1.2e-07 | 31.9 | Leucine Rich repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 181 | 196 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF07723 |
LRR_2 | Repeat | 181 | 204 | 1e-07 | 33.0 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 208 | 265 | 1.8e-51 | 172.5 | Leucine rich repeat |
XP_057774641.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 249 | 289 | 1.8e-51 | 172.5 | Leucine rich repeat |
XP_057774641.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 252 | 267 | 1.2e-07 | 31.9 | Leucine Rich repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 254 | 276 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 324 | 339 | 1.2e-07 | 31.9 | Leucine Rich repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 327 | 347 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 374 | 435 | 1.8e-51 | 172.5 | Leucine rich repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 375 | 397 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 397 | 411 | 1.2e-07 | 31.9 | Leucine Rich repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 399 | 419 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 426 | 448 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 450 | 472 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 498 | 520 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 523 | 544 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF20141 |
Island | Domain | 594 | 658 | 9.8e-34 | 115.3 | Brassinosteroid receptor island domain |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 687 | 708 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 713 | 732 | 3.4e-55 | 172.7 | Leucine Rich Repeat |
XP_057774641.1 |
Pfam | PF00069 |
Pkinase | Domain | 887 | 1157 | 3e-44 | 152.1 | Protein kinase domain |
XP_057774641.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 890 | 1155 | 2.4e-43 | 149.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。