Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003564`

染色体: Chr01 坐标: 54232320-54235647 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003564`
名称	SmilChr01G003564
描述	uncharacterized SmilChr01G003564
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	54232320 - 54235647 / `+`

ID 对照

NCBI Gene ID	`LOC130994184`
GeneID	`130994184`
locus_tag	`-`
NCBI Name	`LOC130994184`
原始查询	`SmilChr01G003564`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816732]; symbol=AT2G21960; hit=AT2G21960; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816732]; symbol=AT2G21960; hit=AT2G21960; species=arabidopsis; confidence=high
Arabidopsis	`AT2G21960` (AT2G21960) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816732] identity=76.8; qcov=0.975; evalue=5.96e-170; confidence=high
Rice	`Os04g0639300` - identity=84.3; qcov=0.534; evalue=3.14e-105; confidence=medium
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130994184

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057775202.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057775202.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057775202.1`
4	Chloroplast membrane	叶绿体膜	0.40000	`XP_057775202.1`
5	Nucleus	细胞核	0.00000	`XP_057775202.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:54233376`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	C14
`Chr1:54233376`	`ATC`	`A`	2bp_deletion	CDS_variant	1	C14
`Chr1:54233401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B72,C46
`Chr1:54233414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,D11
`Chr1:54233836`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B14,B84,C20,C54,C80
`Chr1:54233836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B14,B84,C20,C54,C80
`Chr1:54234105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B74,C18,C87
`Chr1:54234142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B27,C52
`Chr1:54234273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B59,C52,C78,C81
`Chr1:54234288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B100,B31,B34,C79
`Chr1:54234289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B3,B4,B81,C46
`Chr1:54234357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B4,B81,C46,D10

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919219.1
ACATACATATTTTTTAGTTACGAGAAGTGATGTATATTACGCCAACGGTATAGCAAACTGGCGCCAAGGCTTATCTGTTATTATAACTGGATGTGCAGAACTTTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAGAGAGAGGCGAAAGCAACATTCGCAGCCATGTCCCATTCTCTCTCATCCTTCGCATTCTCTCTCTACAAACACAAGCCGTTCAATCCGGAATTGCTGTCGAGATCCGG...

CDS

1 records

下载 CDS FASTA

LOC130994184
ATGTCCCATTCTCTCTCATCCTTCGCATTCTCTCTCTACAAACACAAGCCGTTCAATCCGGAATTGCTGTCGAGATCCGGTGGATTTCTTGTTCGAGCTTCGTCATCAGCTGCTCCGGGTATCGATTTTTCCACCCTCGAATCCGCCATTGCTAAGAAAGATAGTGATGGAGTGAGAGAGGCACTTGATCAGTTGAGGGAAATTGGATGGGCCAAAAAATGGAGTTCTCAACCATATATATCGCGTCGTACAACATCTCT...

Protein

1 records

下载 Protein FASTA

XP_057775202.1
MSHSLSSFAFSLYKHKPFNPELLSRSGGFLVRASSSAAPGIDFSTLESAIAKKDSDGVREALDQLREIGWAKKWSSQPYISRRTTSLRELTTLGLKNAEELAIPSTRNDAAFLFTVVGSTGFLGILAGQLPGDWGFFVPYLVGSISLVVLAIGSISPGLLQAAIGGFSSFFPDYKERIARHEAAHFLVAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器