Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003620`

染色体: Chr01 坐标: 54752170-54757040 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003620`
名称	SmilChr01G003620
描述	laccase-14-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	54752170 - 54757040 / `+`

ID 对照

NCBI Gene ID	`LOC130994011`
GeneID	`130994011`
locus_tag	`-`
NCBI Name	`LOC130994011`
原始查询	`SmilChr01G003620`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	laccase-14-like
产物	laccase-14-like
Arabidopsis	`AT5G09360` (LAC14) laccase 14 [Source:NCBI gene (formerly Entrezgene);Acc:830795] identity=49.2; qcov=0.988; evalue=0; confidence=high
Rice	`Os02g0749700` (OsLAC10) - identity=51.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0005507 (copper ion binding); GO:0046274 (lignin catabolic process); GO:0048046 (apoplast); GO:0052716 (hydroquinone:oxygen oxidoreductase activity)
KEGG	-
Pfam	PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3)
InterPro	-
eggNOG	-
NR	GeneID:130994011

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057775033.1`
2	Nucleus	细胞核	0.00000	`XP_057775033.1`
3	Chromosome	染色体	0.00000	`XP_057775033.1`
4	Centromere	着丝粒	0.00000	`XP_057775033.1`
5	Chromatin	染色质	0.00000	`XP_057775033.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:54752204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B89,C64
`Chr1:54752268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B33,B5,B77,C72
`Chr1:54752274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B4,C36
`Chr1:54752450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr1:54752768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,B79
`Chr1:54752865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:54755247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr1:54755273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:54755298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,C62
`Chr1:54755386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,C86
`Chr1:54755523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr1:54755622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B98,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775033.1

472 aa

236

472

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 2-59 aa PF00394 Cu-oxidase 74-220 aa PF07731 Cu-oxidase_2 321-455 aa

XP_057775036.1

566 aa

283

566

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 43-153 aa PF00394 Cu-oxidase 168-314 aa PF07731 Cu-oxidase_2 415-549 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775033.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	2	59	4.2e-17	63.0	Multicopper oxidase
`XP_057775033.1`	Pfam	`PF00394`	Cu-oxidase	Domain	74	220	1.3e-38	133.3	Multicopper oxidase
`XP_057775033.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	321	455	2.9e-41	141.1	Multicopper oxidase
`XP_057775036.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	43	153	4.1e-39	134.0	Multicopper oxidase
`XP_057775036.1`	Pfam	`PF00394`	Cu-oxidase	Domain	168	314	2e-38	132.7	Multicopper oxidase
`XP_057775036.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	415	549	3.7e-42	144.0	Multicopper oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919050.1
AACTTAGGACACGTTACTTTCAGCTACCAGAAATGGAAAATAAATTAGTAGTTTCTGCAAACAAGGTTTTCATCCTATGTTTCTTTGGTATAGTTTTGCTCGGAGGCGTAACCCCACTCCATGCTTTAGTTCGTTGCTGCAAGTTCGAAGTGATAAGGTCTTCACACACTAGACTATGCACCAAAAAGAGCATGCTAACGATAAACGGACAGTCTCCGGGGCCAACCATATATGCTAGAAGGGGAGATTTGATTATGCTC...

XM_057919053.1
TTTCAGCTACCAGAAATGGAAAATAAATTAGTAGTTTCTGCAAACAAGGTTTTCATCCTATGTTTCTTTGGTATAGTTTTGCTCGGAGGCGTAACCCCACTCCATGCTTTAGTTCGTTGCTGCAAGTTCGAAGTGATAAGGTCTTCACACACTAGACTATGCACCAAAAAGAGCATGCTAACGATAAACGGACAGTCTCCGGGGCCAACCATATATGCTAGAAGGGGAGATTTGATTATGCTCGATGTTGTTAATCGTGC...

CDS

2 records

下载 CDS FASTA

LOC130994011
ATGGAAAATAAATTAGTAGTTTCTGCAAACAAGGTTTTCATCCTATGTTTCTTTGGTATAGTTTTGCTCGGAGGCGTAACCCCACTCCATGCTTTAGTTCGTTGCTGCAAGTTCGAAGTGATAAGGTCTTCACACACTAGACTATGCACCAAAAAGAGCATGCTAACGATAAACGGACAGTCTCCGGGGCCAACCATATATGCTAGAAGGGGAGATTTGATTATGCTCGATGTTGTTAATCGTGCCGATCAAAATATAAC...

LOC130994011
ATGCCGAGGTATCCATGGTCCGATGGCACGGACTTTGTGACTCAGTGCCCGATTCGTCCCGGCCAAAGGTTTACACAACGGATGATCCTGTCGGACGAAGAAGGCACTTTGTGGTGGCATGCTCACAGCGATTGGTCTCGAAATTCTGTGTATGGCGCCATCGTTATTCTACCGCCGACTGCCCAGGCTTTTCCGTTTCCGAAGCCTCATGCACATCTTCCCATCTTAATAGGAGAGTGGTGGAATGCTGATGTGGAAGA...

Protein

2 records

下载 Protein FASTA

XP_057775033.1
MPRYPWSDGTDFVTQCPIRPGQRFTQRMILSDEEGTLWWHAHSDWSRNSVYGAIVILPPTAQAFPFPKPHAHLPILIGEWWNADVEEVFGNFLAGGGDPEVSDAFLINGQPGDLYPCSRQDTYKVFVKPGKTYLIKLVNAVMDNIMFFKIAGHNLTVVGTDGAYTKPMTTDYVAISPGQTIDVLLETNQPPSHYYMAARIYASGGEFVTTPATAIIEYVGNHYTPPPSPFLPSFPEYNDSAASVDFTDQLRSLANDVDVP...

XP_057775036.1
MENKLVVSANKVFILCFFGIVLLGGVTPLHALVRCCKFEVIRSSHTRLCTKKSMLTINGQSPGPTIYARRGDLIMLDVVNRADQNITIHWHGVKMPRYPWSDGTDFVTQCPIRPGQRFTQRMILSDEEGTLWWHAHSDWSRNSVYGAIVILPPTAQAFPFPKPHAHLPILIGEWWNADVEEVFGNFLAGGGDPEVSDAFLINGQPGDLYPCSRQDTYKVFVKPGKTYLIKLVNAVMDNIMFFKIAGHNLTVVGTDGAYTK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器