当前解析结果
SmilChr01G003627| 统一新 Gene ID | SmilChr01G003627 |
|---|---|
| 名称 | SmilChr01G003627 |
| 描述 | uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 54807969 - 54815816 / + |
| NCBI Gene ID | LOC130993754 |
|---|---|
| GeneID | 130993754 |
| locus_tag | - |
| NCBI Name | LOC130993754 |
| 原始查询 | SmilChr01G003627 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843511]; symbol=AT1G71810; hit=AT1G71810; species=arabidopsis; confidence=high |
| 产物 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843511]; symbol=AT1G71810; hit=AT1G71810; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G71810 (AT1G71810)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843511] identity=69.8; qcov=0.897; evalue=0; confidence=high |
| Rice | Os04g0640500- identity=68.1; qcov=0.915; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF03109 (ABC1); PF27536 (UbiB_helical) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993754 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774776.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057774776.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057774776.1 |
| 4 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057774786.1 |
| 5 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057774776.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:54808087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,C29,C37,C86,C87 |
Chr1:54808240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr1:54811140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr1:54813217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr1:54814887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B13,B131 |
Chr1:54815054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774776.1PF03109
ABC1 154-386 aa
XP_057774781.1PF03109
ABC1 154-386 aa
PF27536
UbiB_helical 417-463 aa
XP_057774786.1PF03109
ABC1 154-386 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774776.1 |
Pfam | PF03109 |
ABC1 | Domain | 154 | 386 | 2.2e-68 | 230.8 | ABC1 atypical kinase-like domain |
XP_057774781.1 |
Pfam | PF03109 |
ABC1 | Domain | 154 | 386 | 2e-68 | 230.9 | ABC1 atypical kinase-like domain |
XP_057774781.1 |
Pfam | PF27536 |
UbiB_helical | Domain | 417 | 463 | 3.1e-07 | 30.6 | UbiB helical domain |
XP_057774786.1 |
Pfam | PF03109 |
ABC1 | Domain | 154 | 386 | 1.6e-68 | 231.2 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。